Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq9 109 5e-19 seq3 87.8 2e-12 >seq9 Length=97764462 Score = 109 bits (120), Expect = 5e-19 Identities = 151/209 (72%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | |||||||||||||| || ||||||||| || ||| | | | || || || Sbjct 51006796 AAATGGAGAGTGGACTCTTTCTGGATGTTGTAATCGGACAGAGTGCGGCCA-TCTTCAAG 51006738 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| || || || | || | |||||||| || || ||||| || || ||||| ||| Sbjct 51006737 CTGTTTTCCGGCAAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCTTTGTCCTGGAT 51006678 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 || ||| | | || | ||||| | |||||| || || | |||| |||||||| Sbjct 51006677 TTTAGCCTTAACATTTTCGATAGTGTCTGAGGGCTCAACTTCAAGTGTGATTGTTTTGCC 51006618 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATGG 133662 || |||||||| ||||| |||||||||| Sbjct 51006617 AGTGAGAGTTTTCACGAAGATCTGCATGG 51006589 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 133458 TGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTG 133516 ||| | |||||||||||||| || ||||||||| || ||| | | | || || ||||| Sbjct 51007021 TGTTTCGTGGACTCTTTCTGGATGTTGTAATCGGACAGAGTGCGGCCA-TCTTCAAGCTG 51006963 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 || || || | || | |||||||| || || ||||| || || ||||| ||| || Sbjct 51006962 TTTTCCGGCAAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCTTTGTCCTGGATTTT 51006903 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||| | | || | ||||| | |||||| || || | |||| |||||||| || Sbjct 51006902 AGCCTTAACATTTTCGATAGTGTCTGAGGGCTCAACTTCAAGTGTGATTGTTTTGCCAGT 51006843 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 |||||||| || || |||||||| Sbjct 51006842 GAGAGTTTTGACAAATATCTGCAT 51006819 >seq3 Length=91555047 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || || || || || || |||||| | ||| || || Sbjct 54869496 GTGGACTCCTTCTGGATGTTATAGTCTGACAGTGTTCTTCCGTCCTCCAACTGTTTACCA 54869437 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || | | ||| ||||| || || || || ||||| || |||||| |||| Sbjct 54869436 GCAAAGATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCCTGGATCTTGGCCTTG 54869377 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||||| ||||| | ||| || || || | ||||| ||| ||||| ||||| || Sbjct 54869376 ACATTCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATGGTCTTGCCTGTCAGGGTC 54869317 Query 133644 TTTACGAAAATCTGCATG 133661 || || |||||||||||| Sbjct 54869316 TTCACAAAAATCTGCATG 54869299 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || || || || || || |||||| | ||| || || Sbjct 54870825 GTGGACTCCTTCTGGATGTTATAGTCTGACAGTGTTCTTCCGTCCTCCAACTGTTTACCA 54870766 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || | | ||| ||||| || || || || ||||| || |||||| |||| Sbjct 54870765 GCAAAGATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCCTGGATCTTGGCCTTG 54870706 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||||| ||||| | ||| || || || | ||||| ||| ||||| ||||| || Sbjct 54870705 ACATTCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATGGTCTTGCCTGTCAGGGTC 54870646 Query 133644 TTTACGAAAATCTGCAT 133660 || || ||||||||||| Sbjct 54870645 TTCACAAAAATCTGCAT 54870629 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || || || || || || |||||| | ||| || || Sbjct 54872331 GTGGACTCCTTCTGAATGTTATAGTCTGACAGTGTTCTTCCGTCCTCCAACTGTTTACCA 54872272 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || | | ||| ||||| || || || || ||||| || |||||| |||| Sbjct 54872271 GCAAAGATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCCTGGATCTTGGCCTTG 54872212 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||||| ||||| | ||| || || || | ||||| ||| ||||| ||||| || Sbjct 54872211 ACATTCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATGGTCTTGCCTGTCAGGGTC 54872152 Query 133644 TTTACGAAAATCTGCAT 133660 || || ||||||||||| Sbjct 54872151 TTCACAAAAATCTGCAT 54872135 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || || || || || || |||||| | ||| || || Sbjct 54872692 GTGGACTCCTTCTGGATGTTATAGTCTGACAGTGTTCTTCCGTCCTCCAACTGTTTACCA 54872633 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || | | ||| ||||| || || || || ||||| || |||||| |||| Sbjct 54872632 GCAAAGATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCCTGGATCTTGGCCTTG 54872573 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||||| ||||| | ||| || || || | ||||| ||| ||||| ||||| || Sbjct 54872572 ACATTCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATGGTCTTGCCTGTCAGGGTC 54872513 Query 133644 TTTACGAAAATCTGCAT 133660 || || ||||||||||| Sbjct 54872512 TTCACAAAAATCTGCAT 54872496 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || || || || || || |||||| | ||| || || Sbjct 54873263 GTGGACTCCTTCTGGATGTTATAGTCTGACAGTGTTCTTCCGTCCTCCAACTGTTTACCA 54873204 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || | | ||| ||||| || || || || ||||| || |||||| |||| Sbjct 54873203 GCAAAGATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCCTGGATCTTGGCCTTG 54873144 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||||| ||||| | ||| || || || | ||||| ||| ||||| ||||| || Sbjct 54873143 ACATTCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATGGTCTTGCCTGTCAGGGTC 54873084 Query 133644 TTTACGAAAATCTGCAT 133660 || || ||||||||||| Sbjct 54873083 TTCACAAAAATCTGCAT 54873067 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||| | ||| || || || | || | | ||| ||||| || || || || ||||| Sbjct 54872090 GTCCTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTT 54872031 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 || |||||| ||||| | ||||| ||||| | ||| || || || | ||||| Sbjct 54872030 ATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGAT 54871971 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| ||||| ||||| || || || ||||||||||| Sbjct 54871970 GGTCTTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54871935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483390350532360