Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq9 150 1e-31 seq2 82.4 5e-11 >seq9 Length=97764462 Score = 150 bits (166), Expect = 1e-31 Identities = 174/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||||||||| | |||||||| |||||| |||||| || |||||||||||||| Sbjct 51006817 CCTCCTCTCAAACGAAGAACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAATCGGAC 51006758 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || || | |||||||||||||| |||||||||||||||||| | || Sbjct 51006757 AGAGTGCGGCCATCTTCAAGCTGTTTTCCGGCAAAGATCAAACGCTGCTGATCTGGGGGG 51006698 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || |||||||| ||||| | | ||||| || | ||||| | || || Sbjct 51006697 ATTCCCTCTTTGTCCTGGATTTT-AGCCTTAACATTTTCGATAGTGTCTGAGGGCTCAAC 51006639 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTT 33753 |||| ||||| ||||| || || | ||||| || ||||||||||| ||| Sbjct 51006638 TTCAAGTGTGATTGTTTTGCCAGTGAGAGTTTTCACGAAGATCTGCATGGTT 51006587 Score = 116 bits (128), Expect = 2e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 |||||| || |||||||||||||| || ||||| | || || | |||||||||||||| Sbjct 51007010 CTCTTTCTGGATGTTGTAATCGGACAGAGTGCGGCCATCTTCAAGCTGTTTTCCGGCAAA 51006951 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 |||||||||||||||||| | || | || |||||||| ||||| | | ||||| Sbjct 51006950 GATCAAACGCTGCTGATCTGGGGGGATTCCCTCTTTGTCCTGGATTTT-AGCCTTAACAT 51006892 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 || | ||||| | || || |||| ||||| ||||| || || | ||||| | Sbjct 51006891 TTTCGATAGTGTCTGAGGGCTCAACTTCAAGTGTGATTGTTTTGCCAGTGAGAGTTTTGA 51006832 Query 33737 CAAAGATCTGCAT 33749 |||| |||||||| Sbjct 51006831 CAAATATCTGCAT 51006819 Score = 111 bits (122), Expect = 1e-19 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || || | ||| | |||||| || ||||| ||||||||||||||| ||| | Sbjct 51001980 CCTCCCCTAAGACGGAGCACCAAGTGGAGAGTTGACTCTTTTTGTATGTTATAAGCTTTC 51001921 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||| || ||||| || | ||||| |||||||||||||| || |||||||| | || Sbjct 51001920 AGTTGCCGATCGTCCTCGAGCTGTTTCCCGGCAAAAATCAAGCGTTGCTGATCAGGTGGT 51001861 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC-GCTTGATTCCA 33700 | || || ||||| ||| |||| |||| || | || | | | || ||| | || | Sbjct 51001860 ATTCCCTCCTTGTCTTGAATCTTCTTTTTC-ACGTTCTCTATGCTATCATCTTCA-TCTA 51001803 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| |||||||| || | ||||| |||||||||||||| Sbjct 51001802 CATCTAGAGTGATGGTTTTACCAGTGAGTGTTTTCACAAAGATCTGCAT 51001754 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| | || | ||||| ||| || || ||| ||||| ||||| ||||| Sbjct 51001752 CCTCCTCTGAGTCGGAGCACCAGATGAAGTGTAGACTCCTTTTGGATGTTATAATCCAGC 51001693 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | | | || || || |||||||| || ||||| || || | |||||| ||| || Sbjct 51001692 AAGGACCTATCATCCTCTAATTGTTTACCTGCAAATATTAATCTCTGCTGGTCTACAGGG 51001633 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCACG 33702 | ||||| || || ||||| | ||||| | | | || || | || ||| Sbjct 51001632 ATTCCTTCCTTCTCCATGATTTTTTCTTTCACCTTTTTGACCTCCTCCGCGGCCTCAACG 51001573 Query 33703 TCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTT 33753 |||| |||||||| || || ||||| || ||||||||||||||||| ||| Sbjct 51001572 TCAATGGTGATCGTCTTTCCAGTTAAAGTCTTTACAAAGATCTGCATTGTT 51001522 Score = 86.0 bits (94), Expect = 4e-12 Identities = 114/157 (73%), Gaps = 1/157 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| ||||||||||| | ||||| || || ||| ||| || ||||||||||| ||| Sbjct 51002210 CACCCCCTCTCAAACGGAGTACCAAGTGAAGCGTGGACTCCTTCTGTATGTTGTAGTCGC 51002151 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 ||| |||| | || || | ||| || |||||||| |||||||| || || || | | Sbjct 51002150 TCAGTATGCGGTGATCCTCGAGTTGCTTCCCGGCAAAGATCAAACGTTGTTGGTCAAGGG 51002091 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 | | || ||||| || || |||| ||| ||||| Sbjct 51002090 GTATTCCCTCTTTTTCAAGGATCTTCT-TTTTAACAT 51002055 >seq2 Length=60074718 Score = 82.4 bits (90), Expect = 5e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| ||||| | |||||||||||| |||| || |||||| || || ||||| || | Sbjct 56214013 CACCTCCTCTAAGACGTAACACCAAGTGTAAGGTAGACTCTTTCTGGATATTGTAGTCCG 56214072 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATC 33635 | | || || |||| || || || || |||||||||||||| | |||||| || Sbjct 56214073 ACAAGGTACGGCCGTCTTCTAACTGCTTGCCGGCAAAAATCAACCTCTGCTGGTC 56214127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328683813362880