Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq3 111 5e-21 seq2 104 7e-19 seq6 96.9 1e-16 seq4 96.9 1e-16 >seq3 Length=91555047 Score = 111 bits (122), Expect = 5e-21 Identities = 84/98 (86%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 2743 AATGACATCTTTGTACTGTGTTTATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTG 2802 |||||| || ||||||| | | | || ||| |||||||||||||||||| |||||||| Sbjct 7262628 AATGACGTCATTGTACTCTCGTCA--GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTG 7262571 Query 2803 AAGATCTAAAGGTCCCTGGTTCAACCCCGGGCTTCAGC 2840 |||||||||||||||||||||||| |||||| ||| || Sbjct 7262570 AAGATCTAAAGGTCCCTGGTTCAATCCCGGGTTTCGGC 7262533 >seq2 Length=60074718 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 17439181 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 17439240 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 17439241 CCGGGTTTCGGC 17439252 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 27189029 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 27188970 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 27188969 CCGGGTTTCGGC 27188958 >seq6 Length=53286271 Score = 96.9 bits (106), Expect = 1e-16 Identities = 56/58 (97%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 52000275 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATCCCGGG 52000332 >seq4 Length=56899080 Score = 96.9 bits (106), Expect = 1e-16 Identities = 56/58 (97%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 31844600 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATCCCGGG 31844657 Score = 96.9 bits (106), Expect = 1e-16 Identities = 56/58 (97%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 31849057 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATCCCGGG 31849114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15848726464155