Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1597 154 2e-32 seq1 149 9e-31 seq5 104 3e-17 >seq1597 Length=274804 Score = 154 bits (170), Expect = 2e-32 Identities = 170/226 (75%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||| || || || | ||| ||| ||||| ||||||||||| | ||| | ||| | Sbjct 211176 CCTCATCCCTGCTGATAAGTTCATTACTGAATGTAAGTCCAGGCATGATACCCCTCTTCT 211235 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||| |||||||| |||||| |||| |||||||| |||||||| || ||||| Sbjct 211236 TCAGCCAGAATATGGCGGCAAAACTTCCACTGAAGAAGATTCCTTCTACGGCAGCAAAGC 211295 Query 39759 CAACAAGTCTCTCTCCGTAACT---TGTATCATTATGTATCCACTTCTGTGCCCAATCAG 39815 |||||| || |||||||||| | | || | | ||||| || ||||| || | Sbjct 211296 CAACAACTCGCTCTCCGTAAGTAGATTCCTCGTCACCAATCCATTTAATAGCCCAGTCGG 211355 Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATA 39861 | |||||||| ||||| ||||||||||| || ||||| || ||||| Sbjct 211356 CCTTCTTCTTCACACAGGGCATTGTTTCAATGGCATTGAATAGATA 211401 Score = 116 bits (128), Expect = 5e-21 Identities = 155/214 (72%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 40004 TTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATAT 40063 ||||| || ||||||||||||||||| ||||| || || | || || || |||| | Sbjct 211909 TTTTCGTTAACTATTCCATCACTAGCAGCAAAGAAGGCTAGCACGTGAGAGATGAAATGT 211968 Query 40064 TTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCA 40123 | || || ||| || | ||||| | || || |||| ||| ||||| || Sbjct 211969 CTCTCGTCCTTCTTCAGATTTTCCCAGTGTGGCAAGTCCTTGGATAAATCAACTTCCTCG 212028 Query 40124 GCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATT 40183 |||||||| ||||| ||||| ||||| |||||||| | |||||||||| |||| || || Sbjct 212029 GCTGTCCAGAACGATGCCTCCGCCTTCTTGTACATTTGCCATATATCATGATACTGGATG 212088 Query 40184 GGAAAAATAACAAATCTATTTGGATTTT-TTGCA 40216 || || | |||||| | |||| |||| ||||| Sbjct 212089 GGGAATACAACAAAGCGCCTTGGGTTTTCTTGCA 212122 Score = 100 bits (110), Expect = 4e-16 Identities = 100/129 (78%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 39887 TATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAAT 39946 || || || || || ||||| |||||||||||||||||||| || || || || || ||| Sbjct 211564 TAAGTGTCAATCAAAAGACTGTACATTTCTGAATGGATGTTCTCCATGGCAATTTGGAAT 211623 Query 39947 CCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCC--AAAT 40004 || |||||||||||||||||||| ||| || ||| | |||||| ||| || ||| Sbjct 211624 CCATAAAAACATCTTGCTTCAGTGGATTGGACTTCTTTGCTAAATCTCTCCACCTGAAAA 211683 Query 40005 TTTCATTCA 40013 ||| || || Sbjct 211684 TTTAATGCA 211692 >seq1 Length=104615532 Score = 149 bits (164), Expect = 9e-31 Identities = 169/226 (75%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||| || || || | ||| ||| ||||| ||||||||||| | || | ||| | Sbjct 19031885 CCTCATCCCTGCTGATAAGTTCATTACTGAATGTAAGTCCAGGCATGATCCCCCTCTTCT 19031826 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| |||||||| |||||| |||| |||||||| |||||||| || ||||| Sbjct 19031825 TGAGCCAGAATATGGCGGCAAAACTTCCACTGAAGAAGATTCCTTCTACGGCAGCAAAGC 19031766 Query 39759 CAACAAGTCTCTCTCCGTAACT---TGTATCATTATGTATCCACTTCTGTGCCCAATCAG 39815 |||||| || |||||||||| | | || | | ||||| || ||||| || | Sbjct 19031765 CAACAACTCGCTCTCCGTAAGTAGATTCCTCGTCACCGATCCATTTAATAGCCCAGTCGG 19031706 Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATA 39861 | ||||| || ||||| ||||||||||| || ||||| || ||||| Sbjct 19031705 CCTTCTTTTTCACACAGGGCATTGTTTCAATGGCATTGAATAGATA 19031660 Score = 122 bits (134), Expect = 1e-22 Identities = 156/214 (73%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 40004 TTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATAT 40063 ||||| || |||||||| ||||| || ||||| || || | ||||| || |||| | Sbjct 19031148 TTTTCGTTAACTATTCCGTCACTGGCAGCAAAGAAGGCTAGCACATGAGAGATGAAATGT 19031089 Query 40064 TTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCA 40123 | || || ||| || | ||||| | || || |||| ||| ||||| || Sbjct 19031088 CTCTCGTCCTTCTTCAGATTTTCCCAGTGTGGCAAGTCCTTGGATAAATCAACTTCCTCG 19031029 Query 40124 GCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATT 40183 |||||||| ||||| ||||||||||| |||||||| | |||||||||| |||| || || Sbjct 19031028 GCTGTCCAGAACGATGCCTCTGCCTTCTTGTACATTTGCCATATATCATGATACTGGATG 19030969 Query 40184 GGAAAAATAACAAATCTATTTGGATTTT-TTGCA 40216 ||||| | |||||| | |||| |||| ||||| Sbjct 19030968 GGAAATACAACAAAGCGCCTTGGGTTTTCTTGCA 19030935 Score = 95.1 bits (104), Expect = 2e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 39887 TATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAAT 39946 || || || || || ||||| |||||||||||||||||||| || || || || || ||| Sbjct 19031497 TAAGTGTCAATCAAAAGACTGTACATTTCTGAATGGATGTTCTCCATGGCAATTTGGAAT 19031438 Query 39947 CCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTC 39996 || |||||||||||||||||||| ||| || ||| | |||||| || Sbjct 19031437 CCATAAAAACATCTTGCTTCAGTGGATTGGACTTCTTTGCTAAATCTCTC 19031388 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAG 39504 || ||| ||||||||||| || ||||| |||||||| ||| |||||||||||||| Sbjct 19032440 CAGTCTGTCTGCAACAAACTCGATGTACTGTTTCATCAGCGTACAGTTCATTCCTATGAG 19032381 Query 39505 TTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTC 39555 || ||||| || || ||||| || || |||| |||||| ||| ||||| Sbjct 19032380 GTTTACTGGGAGCGCTTCCGTCAGGAATTCTTGTTCGATTCTTACTGCCTC 19032330 >seq5 Length=54553330 Score = 104 bits (114), Expect = 3e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||||||||| | || || | |||||| |||||||| ||||| | || | || | Sbjct 25741321 TGAAATTCCCCAGACAGTACCCTCCTAGTGTATATATTACTAGTATAGGCCTCTATAGCT 25741262 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 ||||| || || || || ||||| ||||| ||||| ||||| || || | ||| |||||| Sbjct 25741261 TCATTGTTACCTAGGATCTGAGCTGTTGAGGCAGTGGGCATGGGAGCTAACAACAAACTA 25741202 Query 68839 TTTCTAAGACCATGT 68853 || || | ||| ||| Sbjct 25741201 TTCCTTACACCGTGT 25741187 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 69325 ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG 69384 ||||||||||| |||||||||||||| || || || |||||||| ||||| ||| | Sbjct 25738966 ATCTCTGTACACAGATTACTACATTTTATGGTGCCTAGATTTTGTTGATTGGATTTTCGG 25738907 Query 69385 TTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATA 69444 ||||| ||||||||| | || | || |||||||| || | || || ||||| ||| Sbjct 25738906 TTACAATGGTCCTTGTATAACATGTAAGGTGTACCAGTCTCCGTTTGGGACTCGATGATA 25738847 Query 69445 G 69445 | Sbjct 25738846 G 25738846 Score = 86.0 bits (94), Expect = 9e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| ||||||| ||||| || || ||||| || | || ||||||||||| || | Sbjct 25744981 TCCAGGCGTAGAAGTGCATGCTGGTCAGTTTTCCGTAGTTAGGCTCGGCTATATGGATGT 25744922 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 ||| || ||||| ||||| ||||| |||||||| || || |||||||| | | | | Sbjct 25744921 TCAGAGACTGACTCTGATCAATGAACGCTCCTCTGTCGGCTGCCATTTTGAGCACTGTTT 25744862 Query 68561 TTTGAGGAATTTCCCAAATAGTCTT 68585 | || | |||||||| | ||||| Sbjct 25744861 TCTGGGAGATTTCCCATACTGTCTT 25744837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686865533331960