Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1 120 2e-22 seq1597 107 2e-18 seq3 86.0 5e-12 >seq1 Length=104615532 Score = 120 bits (132), Expect = 2e-22 Identities = 149/202 (74%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 ||||| || ||||| || || |||||||| ||||||||||||||||| || ||| |||| Sbjct 19030955 TTTGTTGTATTTCCCATCCAGTATCATGATATATGGCAAATGTACAAGAAGGCAGAGGCA 19031014 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGG--ATTGCAT 43817 || || |||||||| || ||||||||||| | || ||||| |||| ||| | | Sbjct 19031015 TCGTTCTGGACAGCCGAGGAAGTTGATTTATCCAAGGACTTGCCACACTGGGAAAATCTG 19031074 Query 43818 TAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACG 43877 | || || || | |||||| || ||| || | || || |||||||| || |||| Sbjct 19031075 AAGAAGGAC--GAGAGACATTTCATCTCTCATGTGCTAGCCTTCTTTGCTGCCAGTGACG 19031132 Query 43878 GGATAGTCAATGAAAATTTGGT 43899 | ||||| || ||||| |||| Sbjct 19031133 GAATAGTTAACGAAAACCTGGT 19031154 Score = 107 bits (118), Expect = 2e-18 Identities = 85/102 (83%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 43914 AAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATA 43973 ||||||| |||| | |||||| ||||||||||||| || ||||||||||| || || | Sbjct 19031401 AAGAAGTCCAATCCACTGAAGCAAGATGTTTTTATGGATTCCAAATTGCCATGGAGAACA 19031460 Query 43974 TTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCA 44015 | ||||| ||||||||||||||| |||| || || ||||||| Sbjct 19031461 TCCATTCAGAAATGTACAGTCTTTTGATTGACACTTACATCA 19031502 >seq1597 Length=274804 Score = 107 bits (118), Expect = 2e-18 Identities = 85/102 (83%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 43914 AAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATA 43973 ||||||| |||| | |||||| ||||||||||||| || ||||||||||| || || | Sbjct 211660 AAGAAGTCCAATCCACTGAAGCAAGATGTTTTTATGGATTCCAAATTGCCATGGAGAACA 211601 Query 43974 TTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCA 44015 | ||||| ||||||||||||||| |||| || || ||||||| Sbjct 211600 TCCATTCAGAAATGTACAGTCTTTTGATTGACACTTACATCA 211559 Score = 107 bits (118), Expect = 2e-18 Identities = 146/202 (72%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 ||||| || || || || || |||||||| ||||||||||||||||| || || |||| Sbjct 212102 TTTGTTGTATTCCCCATCCAGTATCATGATATATGGCAAATGTACAAGAAGGCGGAGGCA 212043 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGG--ATTGCAT 43817 || || |||||||| || ||||||||||| | || ||||| |||| ||| | | Sbjct 212042 TCGTTCTGGACAGCCGAGGAAGTTGATTTATCCAAGGACTTGCCACACTGGGAAAATCTG 211983 Query 43818 TAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACG 43877 | || || || | |||||| || ||| || | || || |||||||| || || | Sbjct 211982 AAGAAGGAC--GAGAGACATTTCATCTCTCACGTGCTAGCCTTCTTTGCTGCTAGTGATG 211925 Query 43878 GGATAGTCAATGAAAATTTGGT 43899 | ||||| || ||||| |||| Sbjct 211924 GAATAGTTAACGAAAACCTGGT 211903 >seq3 Length=91555047 Score = 86.0 bits (94), Expect = 5e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 41138 GGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACA 41197 ||||||||| || || |||||||| || |||||| ||||||| || || ||||||||||| Sbjct 20987375 GGGACTAGGAGTGCCTTTTAACATTGCCAGTTATTCTCTGCTTACTTACATGATTGCACA 20987434 Query 41198 CGTTACCAATTTAAA 41212 |||||||| ||||| Sbjct 20987435 TGTTACCAAGTTAAA 20987449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397431591109195