Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq3 141 1e-28 seq9 129 7e-25 >seq3 Length=91555047 Score = 141 bits (156), Expect = 1e-28 Identities = 174/238 (73%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 27395 ATATTACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGG 27454 ||||||| ||||| || ||||| ||||| || || |||||||| || || | || | Sbjct 54870263 ATATTACAGGTATGCAGATTTTTGTGAAGACCCTGACAGGCAAGACCATCACGTTGGAAG 54870322 Query 27455 TTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTC 27514 | || | ||| | ||||| ||| | ||||| || || ||||| ||||||||||||| Sbjct 54870323 TAGAACCCTCTGACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTC 54870382 Query 27515 CTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAG 27574 | |||||||| ||| | | || ||||||||||| || | ||||| | | || || Sbjct 54870383 CCCCAGACCAACAGAGATTGATCTTTGCTGGTAAACAGTTGGAGGACGGAAGAACACTGT 54870442 Query 27575 CAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| |||| ||||| ||||| || ||||| || | ||||| || || || Sbjct 54870443 CAGACTATAACATCCAGAAGGAGTCCACACTCCATCTTGTACTTCGTCTCCGAGGAGG 54870500 Score = 141 bits (156), Expect = 1e-28 Identities = 174/238 (73%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 27395 ATATTACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGG 27454 ||||||| ||||| || ||||| ||||| || || |||||||| || || | || | Sbjct 54872485 ATATTACAGGTATGCAGATTTTTGTGAAGACCCTGACAGGCAAGACCATCACCTTGGAAG 54872544 Query 27455 TTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTC 27514 | || | ||| | ||||| ||| | ||||| || || ||||| ||||||||||||| Sbjct 54872545 TAGAACCCTCTGACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTC 54872604 Query 27515 CTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAG 27574 | |||||||| ||| | | || ||||||||||| || | ||||| | | || || Sbjct 54872605 CCCCAGACCAACAGAGATTGATCTTTGCTGGTAAACAGTTGGAGGACGGAAGAACACTGT 54872664 Query 27575 CAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| |||| ||||| ||||| || ||||| || | ||||| || || || Sbjct 54872665 CAGACTATAACATCCAGAAGGAGTCCACACTCCATCTTGTACTTCGTCTCCGAGGAGG 54872722 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| || || |||||||| || || | || || || | | Sbjct 54869300 ATGCAGATTTTTGTGAAGACCCTGACAGGCAAGACCATCACCTTGGAAGTAGAACCCTCT 54869359 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| || || ||||| |||||||||||||| |||||||| Sbjct 54869360 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCCCCAGACCAA 54869419 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || ||||||||||| || | ||||| | | || || |||||||||| Sbjct 54869420 CAGAGATTGATCTTTGCTGGTAAACAGTTGGAGGACGGAAGAACACTGTCAGACTATAAC 54869479 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || ||||| || | ||||| || || || Sbjct 54869480 ATCCAGAAGGAGTCCACACTCCATCTTGTACTTCGTCTCCGAGGAGG 54869526 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| || || |||||||| || || | || || || | | Sbjct 54870629 ATGCAGATTTTTGTGAAGACCCTGACAGGCAAGACCATCACCTTGGAAGTAGAACCCTCT 54870688 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| || || ||||| |||||||||||||| |||||||| Sbjct 54870689 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCCCCAGACCAA 54870748 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || ||||||||||| || | ||||| | | || || |||||||||| Sbjct 54870749 CAGAGATTGATCTTTGCTGGTAAACAGTTGGAGGACGGAAGAACACTGTCAGACTATAAC 54870808 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || ||||| || | ||||| || || || Sbjct 54870809 ATCCAGAAGGAGTCCACACTCCATCTTGTACTTCGTCTCCGAGGAGG 54870855 Score = 140 bits (154), Expect = 4e-28 Identities = 175/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 27395 ATATTACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGG 27454 ||||||| ||||| || ||||| ||||| || || |||||||| || || | || | Sbjct 54873056 ATATTACAGGTATGCAGATTTTTGTGAAGACCCTGACAGGCAAGACCATCACCTTGGAAG 54873115 Query 27455 TTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTC 27514 | || | ||| | ||||| ||| | ||||| || || ||||| ||||||||||||| Sbjct 54873116 TAGAACCCTCTGACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTC 54873175 Query 27515 CTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAG 27574 | |||||||| ||| | | || ||||||||||| || | ||||| | | || || Sbjct 54873176 CCCCAGACCAACAGAGATTGATCTTTGCTGGTAAACAGTTGGAGGACGGAAGAACACTGT 54873235 Query 27575 CAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGAC 27634 |||||||||| |||| ||||| ||||| || ||||| || | ||||| | || |||| Sbjct 54873236 CAGACTATAACATCCAGAAGGAGTCCACACTCCATCTTGTACTTCGTCTCAGAGGAGGAC 54873295 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| || || |||||||| || || | || || || | | Sbjct 54872135 ATGCAGATTTTTGTGAAGACCCTGACAGGCAAGACCATCACCTTGGAAGTAGAACCCTCT 54872194 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| || || ||||| |||||||||||||| |||||||| Sbjct 54872195 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCCCCAGACCAA 54872254 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || ||||||||||| || | ||||| | | || || |||||||||| Sbjct 54872255 CAGAGATTGATCTTTGCTGGTAAACAGTTGGAGGACGGAAGAACACTGTCAGACTATAAC 54872314 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| ||||| || ||||| || | ||||| || || || Sbjct 54872315 ATTCAGAAGGAGTCCACACTCCATCTTGTACTTCGTCTCCGAGGAGG 54872361 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| || || |||||||| || || | || || || | | Sbjct 54871935 ATGCAGATTTTTGTGAAGACCCTGACAGGCAAGACCATCACCTTGGAAGTAGAACCCTCT 54871994 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| || || ||||| |||||||||||||| |||||||| Sbjct 54871995 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGAATTCCCCCAGACCAA 54872054 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || ||||||||||| || | ||||| | | || || |||||||||| Sbjct 54872055 CAGAGATTGATCTTTGCTGGTAAACAGTTGGAGGACGGAAGAACACTGTCAGACTATAAC 54872114 Query 27586 GTCCAAAAGGA 27596 | || ||||| Sbjct 54872115 ATTCAGAAGGA 54872125 >seq9 Length=97764462 Score = 129 bits (142), Expect = 7e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || || || || || ||||| || || || ||||| |||||| | Sbjct 51006591 ATGCAGATCTTCGTGAAAACTCTCACTGGCAAAACAATCACACTTGAAGTTGAGCCCTCA 51006650 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | ||||||||||| |||||||| |||||||| || ||||| ||| Sbjct 51006651 GACACTATCGAAAATGTTAAGGCTAAAATCCAGGACAAAGAGGGAATCCCCCCAGATCAG 51006710 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || ||||| || || || || || |||| || || || | || || || Sbjct 51006711 CAGCGTTTGATCTTTGCCGGAAAACAGCTTGAAGATGGCCGCACTCTGTCCGATTACAAC 51006770 Query 27586 GTCCAAAAGGAATCCACTCTTCAT 27609 |||| || || |||||||| ||| Sbjct 51006771 ATCCAGAAAGAGTCCACTCTCCAT 51006794 Score = 127 bits (140), Expect = 2e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || |||||||| || || || ||||| || || || ||||| |||||| | Sbjct 51006818 AATGCAGATATTTGTCAAAACTCTCACTGGCAAAACAATCACACTTGAAGTTGAGCCCTC 51006877 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | |||| | ||||||||||| |||||||| |||||||| || ||||| || Sbjct 51006878 AGACACTATCGAAAATGTTAAGGCTAAAATCCAGGACAAAGAGGGAATCCCCCCAGATCA 51006937 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||| | || ||||| || || || || || |||| || || || | || || || Sbjct 51006938 GCAGCGTTTGATCTTTGCCGGAAAACAGCTTGAAGATGGCCGCACTCTGTCCGATTACAA 51006997 Query 27585 TGTCCAAAAGGAATCCAC 27602 |||| || || ||||| Sbjct 51006998 CATCCAGAAAGAGTCCAC 51007015 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || || || || || || || ||||| || || || || | Sbjct 51001754 ATGCAGATCTTTGTGAAAACACTCACTGGTAAAACCATCACTCTAGATGTAGATGAAGAT 51001813 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||||||| | || |||| || ||||| |||||||||||||| || || || ||| Sbjct 51001814 GATAGCATAGAGAACGTGAAAAAGAAGATTCAAGACAAGGAGGGAATACCACCTGATCAG 51001873 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || | |||||||| || || || |||||||| ||||| || || ||||| Sbjct 51001874 CAACGCTTGATTTTTGCCGGGAAACAGCTCGAGGACGATCGGCAACTGAAAGCTTATAAC 51001933 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | ||||| || || ||||| || | || | |||||| | || ||| Sbjct 51001934 ATACAAAAAGAGTCAACTCTCCACTTGGTGCTCCGTCTTAGGGGAGGA 51001981 Score = 111 bits (122), Expect = 2e-19 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || ||||| ||||| || ||||| |||||| | | || ||| | Sbjct 51001981 AATGCAAATCTTCGTGAAGACACTTACAGGAAAGACAATTACTTTAAATGTAGAGGGCGA 51002040 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| || || | |||| | || || || | || || |||||||| || | ||||| Sbjct 51002041 TGACAGTATCGAAAATGTTAAAAAGAAGATCCTTGAAAAAGAGGGAATACCCCTTGACCA 51002100 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATA 27583 || ||| | || ||||| || ||||||||||||||| | || | || ||| ||||| | Sbjct 51002101 ACAACGTTTGATCTTTGCCGGGAAGCAACTCGAGGATCACCGCATACTGAGC-GACTACA 51002159 Query 27584 ATGTCCAAAAGGAATCCACTCTTCA 27608 | | || ||||| ||||| ||||| Sbjct 51002160 ACATACAGAAGGAGTCCACGCTTCA 51002184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570274477573680