Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq9 131 1e-25 seq3 125 4e-24 >seq9 Length=97764462 Score = 131 bits (144), Expect = 1e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||| | ||||||||||||||| ||| || || ||||| ||||| || Sbjct 51006817 CCTCCTCTCAAACGAAGAACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAATCGGAC 51006758 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | |||||||| ||||| |||||||| || |||||||| || || || || Sbjct 51006757 AGAGTGCGGCCATCTTCAAGCTGTTTTCCGGCAAAGATCAAACGCTGCTGATCTGGGGGG 51006698 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | |||||| ||||| ||| ||| | ||||| | || |||||| | ||| || Sbjct 51006697 ATTCCCTCTTTGTCCTGGAT-TTTAGCCTTAACATTTTCGATAGTGTCTGAGGGCTCAAC 51006639 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||| | || || ||||| || || | |||||||| || ||||||||| Sbjct 51006638 TTCAAGTGTGATTGTTTTGCCAGTGAGAGTTTTCACGAAGATCTGCATG 51006590 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || |||||||| | |||||| |||||||| ||| ||||| ||||||||| || Sbjct 51001980 CCTCCCCTAAGACGGAGCACCAAGTGGAGAGTTGACTCTTTTTGTATGTTATAAGCTTTC 51001921 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||| || ||||| || || ||||| |||||||| || || || || || || || || Sbjct 51001920 AGTTGCCGATCGTCCTCGAGCTGTTTCCCGGCAAAAATCAAGCGTTGCTGATCAGGTGGT 51001861 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||||| ||||| | |||| ||| | || | || || || || Sbjct 51001860 ATTCCCTCCTTGTCTTGAATCTTCT-TTTTCACGTTCTCTATGCTATCATCTTCATCTAC 51001802 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || |||||||| || | ||||||||||| |||||||| Sbjct 51001801 ATCTAGAGTGATGGTTTTACCAGTGAGTGTTTTCACAAAGATCTGCAT 51001754 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCT-GA 34538 || ||||| || || | ||||| ||| || || ||||||||| ||||||||||| | Sbjct 51001752 CCTCCTCTGAGTCGGAGCACCAGATGAAGTGTAGACTCCTTTTGGATGTTATAATCCAGC 51001693 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| | | || || || | ||||||||| ||||||||||| | ||| ||||| || Sbjct 51001692 AAG-GACCTATCATCCTCTAATTGTTTACCTGCAAATATTAATCTCTGCTGGTCTACAGG 51001634 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||| ||||| || |||| |||| ||| | | | | || || ||| || Sbjct 51001633 GATTCCTTCCTTCTCCATGATTTTTTCTTTCACCTTTTTGACCTCCTCCGCGGCCTCAAC 51001574 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| ||||| || || ||||| || || ||||| |||||||| Sbjct 51001573 GTCAATGGTGATCGTCTTTCCAGTTAAAGTCTTTACAAAGATCTGCAT 51001526 >seq3 Length=91555047 Score = 125 bits (138), Expect = 4e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||| | || | |||||| ||| |||||| ||||||||||| ||||| Sbjct 54872361 CCTCCTCGGAGACGAAGTACAAGATGGAGTGTGGACTCCTTCTGAATGTTATAGTCTGAC 54872302 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||||| |||| || | |||||||| ||||| || || | ||||||||| || || Sbjct 54872301 AGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGA 54872242 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||| || |||| || | || || | ||| ||||| | || || Sbjct 54872241 ATTCCCTCCTTATCCTGGATC-TTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTAC 54872183 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||| || || || || || | || ||||||||||||||||| Sbjct 54872182 TTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54872135 Score = 125 bits (138), Expect = 4e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| | || | |||||| ||| |||||| || |||||||| ||||| Sbjct 54873293 CCTCCTCTGAGACGAAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTATAGTCTGAC 54873234 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||||| |||| || | |||||||| ||||| || || | ||||||||| || || Sbjct 54873233 AGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGA 54873174 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | ||||||||| || |||||| | || || | ||| ||||| | || || Sbjct 54873173 ATTCCCTCCTTATCCTGGATCTTG-GCCTTGACATTCTCAATGGTGTCAGAGGGTTCTAC 54873115 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||| || || || || || | || ||||||||||||||||| Sbjct 54873114 TTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54873067 Score = 122 bits (134), Expect = 5e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||| | || | |||||| ||| |||||| || |||||||| ||||| Sbjct 54869526 CCTCCTCGGAGACGAAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTATAGTCTGAC 54869467 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||||| |||| || | |||||||| ||||| || || | ||||||||| || || Sbjct 54869466 AGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGA 54869407 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | ||||||||| || |||||| | || || | ||| ||||| | || || Sbjct 54869406 ATTCCCTCCTTATCCTGGATCTTG-GCCTTGACATTCTCAATGGTGTCAGAGGGTTCTAC 54869348 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||| ||| || || || || || | || |||||||||||||||||| Sbjct 54869347 TTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAAATCTGCATG 54869299 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||| | || | |||||| ||| |||||| || |||||||| ||||| Sbjct 54870855 CCTCCTCGGAGACGAAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTATAGTCTGAC 54870796 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||||| |||| || | |||||||| ||||| || || | ||||||||| || || Sbjct 54870795 AGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGA 54870736 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | ||||||||| || |||||| | || || | ||| ||||| | || || Sbjct 54870735 ATTCCCTCCTTATCCTGGATCTTG-GCCTTGACATTCTCAATGGTGTCAGAGGGTTCTAC 54870677 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||| || || || || || | || ||||||||||||||||| Sbjct 54870676 TTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54870629 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||| | || | |||||| ||| |||||| || |||||||| ||||| Sbjct 54872722 CCTCCTCGGAGACGAAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTATAGTCTGAC 54872663 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||||| |||| || | |||||||| ||||| || || | ||||||||| || || Sbjct 54872662 AGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGA 54872603 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | ||||||||| || |||||| | || || | ||| ||||| | || || Sbjct 54872602 ATTCCCTCCTTATCCTGGATCTTG-GCCTTGACATTCTCAATGGTGTCAGAGGGTTCTAC 54872544 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||| || || || || || | || ||||||||||||||||| Sbjct 54872543 TTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54872496 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||| | || | |||||| ||| |||||| || |||||||| ||||| Sbjct 54870500 CCTCCTCGGAGACGAAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTATAGTCTGAC 54870441 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||||| |||| || | |||||||| ||||| || || | ||||||||| || || Sbjct 54870440 AGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGA 54870381 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | ||||||||| || |||||| | || || | ||| ||||| | || || Sbjct 54870380 ATTCCCTCCTTATCCTGGATCTTG-GCCTTGACATTCTCAATGGTGTCAGAGGGTTCTAC 54870322 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || || || || || | || ||||||||||||||||| Sbjct 54870321 TTCCAACGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54870274 Score = 111 bits (122), Expect = 1e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 |||||| ||||||||||| ||||| ||||||| |||| || | |||||||| ||||| Sbjct 54872126 CTCCTTCTGAATGTTATAGTCTGACAGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAA 54872067 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 || || | ||||||||| || || | ||||||||| || |||| || | || || Sbjct 54872066 GATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCCTGGATC-TTGGCCTTGACAT 54872008 Query 34635 T-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 | ||| ||||| | || ||||||| ||| || || || || || | || |||| Sbjct 54872007 TCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCA 54871948 Query 34694 CAAAAATCTGCAT 34706 ||||||||||||| Sbjct 54871947 CAAAAATCTGCAT 54871935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314710271570087