Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq9 134 1e-26 seq10 84.2 2e-11 >seq9 Length=97764462 Score = 134 bits (148), Expect = 1e-26 Identities = 169/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||| || || |||||||| || ||||| | || || |||||||| || || | Sbjct 51006589 CCATGCAGATCTTCGTGAAAACTCTCACTGGCAAAACAATCACACTTGAAGTTGAGCCCT 51006648 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 | ||| | || || | || || ||||| || |||||||| || || || || |||| Sbjct 51006649 CAGACACTATCGAAAATGTTAAGGCTAAAATCCAGGACAAAGAGGGAATCCCCCCAGATC 51006708 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | |||||||| || | ||||| ||||| | ||||| | || | |||||||||| Sbjct 51006709 AGCAGCGTTTGATCTTTGCCGGAAAACAGCTTGAAGATGGCCGCACTCTGTCCGATTACA 51006768 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| || || ||||| || | ||||||||| | |||||| | || || || Sbjct 51006769 ACATCCAGAAAGAGTCCACTCTCCATTTGGTTCTTCGTTTGAGAGGAGGAAT 51006820 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| |||||||| || ||||| | || || |||||||| || || || Sbjct 51006819 ATGCAGATATTTGTCAAAACTCTCACTGGCAAAACAATCACACTTGAAGTTGAGCCCTCA 51006878 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || ||||| || |||||||| || || || || ||||| Sbjct 51006879 GACACTATCGAAAATGTTAAGGCTAAAATCCAGGACAAAGAGGGAATCCCCCCAGATCAG 51006938 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | ||||| ||||| | ||||| | || | |||||||||||| Sbjct 51006939 CAGCGTTTGATCTTTGCCGGAAAACAGCTTGAAGATGGCCGCACTCTGTCCGATTACAAC 51006998 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || || ||||| || Sbjct 51006999 ATCCAGAAAGAGTCCAC 51007015 >seq10 Length=87592839 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 135649 AGGTTGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGTT 135708 ||| ||||||||||| || || || | ||||| ||||| |||||||| || || | || Sbjct 56461828 AGGATGTATGTGGTCCATCTGTGGCATTCACGACCAAGGCTGGAAGGAACGGGAAATCTT 56461769 Query 135709 TGGCAAGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTT 135754 ||| || || || ||||||||||| || || |||| ||||| ||| Sbjct 56461768 TGGAAAAATCCGATATATGAACTACGAGGGCTGTAAGAGAAAGTTT 56461723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434891005577280