Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq9 107 1e-18 >seq9 Length=97764462 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || ||||||||||| ||||| ||| || ||| |||| || || | | Sbjct 51006591 ATGCAGATCTTCGTGAAAACTCTCACTGGCAAAACAATCACACTTGAAGTTGAGCCCTCA 51006650 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | | || || || ||||| |||||||| || | || || ||| Sbjct 51006651 GACACTATCGAAAATGTTAAGGCTAAAATCCAGGACAAAGAGGGAATCCCCCCAGATCAG 51006710 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 || || || || |||||||||||||| | || || | |||| |||||||||||||| Sbjct 51006711 CAGCGTTTGATCTTTGCCGGAAAACAGCTTGAAGATGGCCGCACTCTGTCCGATTACAAC 51006770 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| |||||| |||| | ||||||||| | |||||| | || || Sbjct 51006771 ATCCAGAAAGAGTCCACTCTCCATTTGGTTCTTCGTTTGAGAGGAGG 51006817 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| || ||||| |||||||| ||||| ||| || ||| |||| || || | | Sbjct 51006818 AATGCAGATATTTGTCAAAACTCTCACTGGCAAAACAATCACACTTGAAGTTGAGCCCTC 51006877 Query 27849 CGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908 ||| | | || || || ||||| |||||||| || | || || || Sbjct 51006878 AGACACTATCGAAAATGTTAAGGCTAAAATCCAGGACAAAGAGGGAATCCCCCCAGATCA 51006937 Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAA 27968 ||| || || || |||||||||||||| | || || | |||| ||||||||||||| Sbjct 51006938 GCAGCGTTTGATCTTTGCCGGAAAACAGCTTGAAGATGGCCGCACTCTGTCCGATTACAA 51006997 Query 27969 CATCCAAAAAGAG 27981 |||||| |||||| Sbjct 51006998 CATCCAGAAAGAG 51007010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355840545489153