Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq3 149 1e-30 seq9 136 9e-27 >seq3 Length=91555047 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || |||||||| || ||||||||||| || | || || ||||| || Sbjct 54869511 AGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTATAGTCTGACAGTGTTCTTCCGTCC 54869452 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||| || || || ||||| | | |||||||| || |||| ||| ||||| ||| Sbjct 54869451 TCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCC 54869392 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || |||||||||||| ||| || || | ||||| ||| Sbjct 54869391 TGGATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATGGTC 54869332 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 54869331 TTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54869300 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || |||||||| || ||||||||||| || | || || ||||| || Sbjct 54870485 AGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTATAGTCTGACAGTGTTCTTCCGTCC 54870426 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||| || || || ||||| | | |||||||| || |||| ||| ||||| ||| Sbjct 54870425 TCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCC 54870366 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || |||||||||||| ||| || || | ||||| ||| Sbjct 54870365 TGGATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTACTTCCAACGTGATGGTC 54870306 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 54870305 TTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54870274 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || |||||||| || ||||||||||| || | || || ||||| || Sbjct 54870840 AGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTATAGTCTGACAGTGTTCTTCCGTCC 54870781 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||| || || || ||||| | | |||||||| || |||| ||| ||||| ||| Sbjct 54870780 TCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCC 54870721 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || |||||||||||| ||| || || | ||||| ||| Sbjct 54870720 TGGATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATGGTC 54870661 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 54870660 TTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54870629 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || |||||||| || ||||||||||| || | || || ||||| || Sbjct 54872707 AGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTATAGTCTGACAGTGTTCTTCCGTCC 54872648 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||| || || || ||||| | | |||||||| || |||| ||| ||||| ||| Sbjct 54872647 TCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCC 54872588 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || |||||||||||| ||| || || | ||||| ||| Sbjct 54872587 TGGATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATGGTC 54872528 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 54872527 TTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54872496 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || |||||||| || ||||||||||| || | || || ||||| || Sbjct 54873278 AGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTATAGTCTGACAGTGTTCTTCCGTCC 54873219 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||| || || || ||||| | | |||||||| || |||| ||| ||||| ||| Sbjct 54873218 TCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCC 54873159 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || |||||||||||| ||| || || | ||||| ||| Sbjct 54873158 TGGATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATGGTC 54873099 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 54873098 TTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54873067 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || |||||||| || || |||||||| || | || || ||||| || Sbjct 54872346 AGTACAAGATGGAGTGTGGACTCCTTCTGAATGTTATAGTCTGACAGTGTTCTTCCGTCC 54872287 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||| || || || ||||| | | |||||||| || |||| ||| ||||| ||| Sbjct 54872286 TCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCC 54872227 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || |||||||||||| ||| || || | ||||| ||| Sbjct 54872226 TGGATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATGGTC 54872167 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 54872166 TTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54872135 Score = 127 bits (140), Expect = 5e-24 Identities = 144/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 210922 ACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGA 210981 |||| || || |||||||| || | || || ||||| || |||| ||| || || || | Sbjct 54872127 ACTCCTTCTGAATGTTATAGTCTGACAGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAA 54872068 Query 210982 AGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGT 211041 |||| | | |||||||| || |||| ||| ||||| ||||||||||| || || | Sbjct 54872067 AGATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGACAT 54872008 Query 211042 TTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTA 211101 | || |||||||||||| ||| || || | ||||| ||||| || || || ||||| | Sbjct 54872007 TCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCA 54871948 Query 211102 CAAACACCTGCAT 211114 |||| | |||||| Sbjct 54871947 CAAAAATCTGCAT 54871935 >seq9 Length=97764462 Score = 136 bits (150), Expect = 9e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || |||||||||||||| |||||||| ||||| | || || | |||||||| ||||| Sbjct 51006793 TGGAGAGTGGACTCTTTCTGGATGTTGTAATCGGACAGAGTGCGGCCATCTTCAAGCTGT 51006734 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || ||||| | || || || || || || | ||| || ||||||||||| || Sbjct 51006733 TTTCCGGCAAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCTTTGTCCTGGATTTTA 51006674 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || |||||||| ||||| ||| ||||| || || ||||| || || || ||| Sbjct 51006673 GCCTTAACATTTTCGATAGTGTCTGAGGGCTCAACTTCAAGTGTGATTGTTTTGCCAGTG 51006614 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || | |||||| Sbjct 51006613 AGAGTTTTCACGAAGATCTGCAT 51006591 Score = 136 bits (150), Expect = 9e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 ||||||||||| |||||||| ||||| | || || | |||||||| ||||| || || Sbjct 51007015 GTGGACTCTTTCTGGATGTTGTAATCGGACAGAGTGCGGCCATCTTCAAGCTGTTTTCCG 51006956 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || ||||| | || || || || || || | ||| || ||||||||||| || || Sbjct 51006955 GCAAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTA 51006896 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || |||||||| ||||| ||| ||||| || || ||||| || || || |||||||| Sbjct 51006895 ACATTTTCGATAGTGTCTGAGGGCTCAACTTCAAGTGTGATTGTTTTGCCAGTGAGAGTT 51006836 Query 211098 TTTACAAACACCTGCATT 211115 || ||||| | ||||||| Sbjct 51006835 TTGACAAATATCTGCATT 51006818 Score = 129 bits (142), Expect = 1e-24 Identities = 162/220 (74%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCC-GCAAGGGTCCT 210955 |||| || || || ||||| || ||||| |||||||||||||||||| |||||| ||| Sbjct 51001743 AGTCGGAGCACCAGATGAAGTGTAGACTCCTTTTGGATGTTATAATCCAGCAAGGA-CCT 51001685 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 |||| || | || || ||||| || || | | || ||||| ||| | |||||| Sbjct 51001684 ATCATCCTCTAATTGTTTACCTGCAAATATTAATCTCTGCTGGTCTACAGGGATTCCTTC 51001625 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||| ||| ||| |||| |||||| |||| || || | | ||||| || | || Sbjct 51001624 CTTCTCCATGATTTTTTCTTTCACCTTTTTGACCTCCTCCGCGGCCTCAACGTCAATGGT 51001565 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 |||||||||||| || | |||||||||||| | ||||||| Sbjct 51001564 GATCGTCTTTCCAGTTAAAGTCTTTACAAAGATCTGCATT 51001525 Score = 120 bits (132), Expect = 7e-22 Identities = 156/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| ||||| ||||||||||| ||||||||| | || || | || Sbjct 51001965 AGCACCAAGTGGAGAGTTGACTCTTTTTGTATGTTATAAGCTTTCAGTTGCCGATCGTCC 51001906 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||| || || || || || | |||||| || ||||| || | ||| |||||||| Sbjct 51001905 TCGAGCTGTTTCCCGGCAAAAATCAAGCGTTGCTGATCAGGTGGTATTCCCTCCTTGTCT 51001846 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT--TCAACCTCGAGAGTGATCG 211080 || ||||| | ||||||||| || ||| | || | ||| || || || |||||||| | Sbjct 51001845 TGAATCTTCTTTTTCACGTTCTCTATGCTATC--ATCTTCATCTACATCTAGAGTGATGG 51001788 Query 211081 TCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | || || ||||| || || ||||| | |||||| Sbjct 51001787 TTTTACCAGTGAGTGTTTTCACAAAGATCTGCAT 51001754 Score = 100 bits (110), Expect = 7e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | |||||| |||||||| || || ||||| || || || | | ||| Sbjct 51002193 AGTACCAAGTGAAGCGTGGACTCCTTCTGTATGTTGTAGTCGCTCAGTATGCGGTGATCC 51002134 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || ||||| || || ||||| | |||||||||||| | || | ||| || || || Sbjct 51002133 TCGAGTTGCTTCCCGGCAAAGATCAAACGTTGTTGGTCAAGGGGTATTCCCTCTTTTTCA 51002074 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||||| | ||| || |||||||| ||||| || || || | | ||| || ||| Sbjct 51002073 AGGATCTTCTTTTTAACATTTTCGATACTGTCATCGCCCTCTACATTTAAAGTAATTGTC 51002014 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| || || ||||| || || | |||||| Sbjct 51002013 TTTCCTGTAAGTGTCTTCACGAAGATTTGCATT 51001981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159077162611235