Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq9 167 2e-36 >seq9 Length=97764462 Score = 167 bits (184), Expect = 2e-36 Identities = 176/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||| ||||| || ||||| ||||| || |||||||| || | Sbjct 51006591 ATGCAGATCTTCGTGAAAACTCTCACTGGCAAAACAATCACACTTGAAGTTGAGCCCTCA 51006650 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | |||| | |||| | |||| | |||||||| || | || |||||||| Sbjct 51006651 GACACTATCGAAAATGTTAAGGCTAAAA-TCCAGGACAAAGAGGGAATCCCCCCAGATCA 51006709 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||||| || |||||||| ||||| || ||||| | |||||| | ||||||||| Sbjct 51006710 GCAGCGTTTGATCTTTGCCGGAAAACAGCTTGAAGATGGCCGCACTCTGTCCGATTACAA 51006769 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || ||||||||||| | ||||| ||| | | ||| |||||||| Sbjct 51006770 CATCCAGAAAGAGTCCACTCTCCATTTGGTTCTTCGTTTGAGAGGAGGA 51006818 Score = 149 bits (164), Expect = 4e-31 Identities = 154/199 (77%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || ||||| ||||| || ||||| ||||| || |||||||| || | Sbjct 51006818 AATGCAGATATTTGTCAAAACTCTCACTGGCAAAACAATCACACTTGAAGTTGAGCCCTC 51006877 Query 23670 GGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 |||||| | |||| | |||| | |||| | |||||||| || | || ||||||| Sbjct 51006878 AGACACTATCGAAAATGTTAAGGCTAAAA-TCCAGGACAAAGAGGGAATCCCCCCAGATC 51006936 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | |||||||| || |||||||| ||||| || ||||| | |||||| | |||||||| Sbjct 51006937 AGCAGCGTTTGATCTTTGCCGGAAAACAGCTTGAAGATGGCCGCACTCTGTCCGATTACA 51006996 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || ||||||||||| Sbjct 51006997 ACATCCAGAAAGAGTCCAC 51007015 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || ||||| || || || || ||||| || || ||| | | || || | Sbjct 51001981 AATGCAAATCTTCGTGAAGACACTTACAGGAAAGACAATTACTTTAAATGTAGAGGGCGA 51002040 Query 23670 GGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 |||| | | |||| | |||||| | || || ||| ||||| || |||| | || | Sbjct 51002041 TGACAGTATCGAAAATGTTAAAA-AGAAGATCCTTGAAAAAGAGGGAATACCCCTTGACC 51002099 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||| ||||| || |||||||| || ||||| || || | |||| | |||| |||| Sbjct 51002100 AACAACGTTTGATCTTTGCCGGGAAGCAACTCGAGGATCACCGCATACTGAGCGACTACA 51002159 Query 23789 ACATACAAAAAGAGTCCAC 23807 ||||||| || |||||||| Sbjct 51002160 ACATACAGAAGGAGTCCAC 51002178 Score = 82.4 bits (90), Expect = 5e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || || || | || ||||| |||||||| | || ||||| || | Sbjct 51001525 AATGCAGATCTTTGTAAAGACTTTAACTGGAAAGACGATCACCATTGACGTTGAGGCCGC 51001584 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| || ||| | ||| ||||||| || || ||||| | || ||| || Sbjct 51001585 GGAGGAGGTCAAAAAGGTGAAAGAAAAAATCATGGAGAAGGAAGGAATCCCTGTAGACCA 51001644 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | ||||||||||| || |||||| | || || || | | || ||||| || Sbjct 51001645 GCAGAGATTAATATTTGCAGGTAAACAATTAGAGGATGATAGGTCCTTGCTGGATTATAA 51001704 Query 23790 CATACAAAAAGAGTCCACATTACAT 23814 ||| ||||| ||||| ||| | ||| Sbjct 51001705 CATCCAAAAGGAGTCTACACTTCAT 51001729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337988841879812