Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1 141 8e-29 seq1597 129 5e-25 >seq1 Length=104615532 Score = 141 bits (156), Expect = 8e-29 Identities = 152/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 4931 TACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATAT 4990 ||| | ||||||||| ||||| ||||||||||| ||||| || || | |||||||| || Sbjct 19031155 TACCAGGTTTTCGTTAACTATTCCGTCACTGGCAGCAAAGAAGGCTAGCACATGAGAGAT 19031096 Query 4991 AAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAAC 5050 || | ||||| ||| || |||| |||||| ||||| || || | ||||||||| Sbjct 19031095 GAAATGTCTCTCGTCCTTCTTCAGATTTTCCCAGTGTGGCAAGTCCTTGGATAAATCAAC 19031036 Query 5051 TTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATA 5110 ||| || | ||||| ||||| || || || || |||||||| ||| |||||| |||| Sbjct 19031035 TTCCTCGGCTGTCCAGAACGATGCCTCTGCCTTCTTGTACATTTGCCATATATCATGATA 19030976 Query 5111 CTGAATCGGAAGTATGACAAA 5131 ||| || |||| || ||||| Sbjct 19030975 CTGGATGGGAAATACAACAAA 19030955 >seq1597 Length=274804 Score = 129 bits (142), Expect = 5e-25 Identities = 149/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 4931 TACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATAT 4990 ||| | ||||||||| ||||| || ||||| || ||||| || || | || ||||| || Sbjct 211902 TACCAGGTTTTCGTTAACTATTCCATCACTAGCAGCAAAGAAGGCTAGCACGTGAGAGAT 211961 Query 4991 AAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAAC 5050 || | ||||| ||| || |||| |||||| ||||| || || | ||||||||| Sbjct 211962 GAAATGTCTCTCGTCCTTCTTCAGATTTTCCCAGTGTGGCAAGTCCTTGGATAAATCAAC 212021 Query 5051 TTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATA 5110 ||| || | ||||| ||||| || ||||| || |||||||| ||| |||||| |||| Sbjct 212022 TTCCTCGGCTGTCCAGAACGATGCCTCCGCCTTCTTGTACATTTGCCATATATCATGATA 212081 Query 5111 CTGAATCGGAAGTATGACAAA 5131 ||| || || | || ||||| Sbjct 212082 CTGGATGGGGAATACAACAAA 212102 Score = 95.1 bits (104), Expect = 1e-14 Identities = 155/221 (70%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || || ||||| || ||||| ||| || || | ||| ||||| | ||| ||||| || Sbjct 211178 TCATCCCTGCTGATAAGTTCATTACTGAATGTAAGTCCAGGCATGATACCCCTCTTCTTC 211237 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| |||||||| ||| ||||| || ||||||||||| ||||| | Sbjct 211238 AGCCAGAATATGGCGGCAAAACTTCCACTGAAGAAGATTCCTTCTACGGCAGCAAAGCCA 211297 Query 4692 ACTAATCGGGACCCG-AACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGC 4750 || | ||| ||| || || | | | ||| ||||||||| | ||||||| || Sbjct 211298 ACAACTCGCTCTCCGTAAGTAGAT-TCCTCGTCACCAATCCATTTAATAGCCCAGTCGGC 211356 Query 4751 TTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA 4791 || ||||| || || || ||||| | || || || |||| Sbjct 211357 CTTCTTCTTCACACAGGGCATTGTTTCAATGGCATTGAATA 211397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427023373682987