Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1597 116 5e-21 seq1 113 6e-20 seq5 105 9e-18 >seq1597 Length=274804 Score = 116 bits (128), Expect = 5e-21 Identities = 155/214 (72%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 48528 TTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATAT 48587 || || || ||||||||||||||||||||||| || |||| || || || |||| | Sbjct 211909 TTTTCGTTAACTATTCCATCACTAGCAGCAAAGAAGGCTAGCACGTGAGAGATGAAATGT 211968 Query 48588 TTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCA 48647 | |||| |||| || | ||||| | || || |||| ||| ||||| || Sbjct 211969 CTCTCGTCCTTCTTCAGATTTTCCCAGTGTGGCAAGTCCTTGGATAAATCAACTTCCTCG 212028 Query 48648 GCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATT 48707 |||||||| || |||||||| || || || ||||| | |||||||||| || ||||| Sbjct 212029 GCTGTCCAGAACGATGCCTCCGCCTTCTTGTACATTTGCCATATATCATGATACTGGATG 212088 Query 48708 GGGAAAATAACAAATCTATTTGGATTTT-TTGCA 48740 ||||| | |||||| | |||| |||| ||||| Sbjct 212089 GGGAATACAACAAAGCGCCTTGGGTTTTCTTGCA 212122 Score = 111 bits (122), Expect = 2e-19 Identities = 158/222 (71%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||| || || || | ||| ||| ||||| || || ||||| | || | || || Sbjct 211178 TCATCCCTGCTGATAAGTTCATTACTGAATGTAAGTCCAGGCATGATACCCCTCTTCTTC 211237 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284 ||||| ||||| || || ||| |||| ||||| || ||||||||||| ||||| | Sbjct 211238 AGCCAGAATATGGCGGCAAAACTTCCACTGAAGAAGATTCCTTCTACGGCAGCAAAGCCA 211297 Query 48285 GTAAGTCTCTCTCCGTAACTGGCTTCGTTGT---GTATCCACCGTTGTGCCCAATCAGCC 48341 || || |||||||||| | | ||| | || ||||| ||||| || ||| Sbjct 211298 ACAACTCGCTCTCCGTAAGTAGATTCCTCGTCACCAATCCATTTAATAGCCCAGTCGGCC 211357 Query 48342 TTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 48383 |||||||| ||||| ||||||||||| || ||||| || ||| Sbjct 211358 TTCTTCTTCACACAGGGCATTGTTTCAATGGCATTGAATAGA 211399 Score = 86.0 bits (94), Expect = 9e-12 Identities = 141/200 (71%), Gaps = 10/200 (5%) Strand=Plus/Plus Query 47969 CAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAG 48028 |||||| || ||||| || || || || ||||||| ||| ||||||||||| || Sbjct 210632 CAGTCTGTCGGCAACAAACTCAATGTACTGCTTCATCAGGGTACAGTTCATTCCTATGAG 210691 Query 48029 TTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTAT 48088 || ||||| || || ||||| || || |||||||| || | || || || ||||| Sbjct 210692 GTTTACTGGGAGTGCTTCCGTGAGGAATTCTTGTTCAATTCTTACTGCCTCGCTGATTAT 210751 Query 48089 CG-ATGTTACCGTTTC-CTCA---CTTGGTGGATACAACAAATGTTTAAACATTAAACAT 48143 | |||| |||||| | | |||| | || | ||| || ||||| ||||| Sbjct 210752 GGAATGTATGCGTTTCTGTGAGGGCTTG-----TTCACAAGATGGTTGAACATCAAACAG 210806 Query 48144 GCAAAATCACAATGAAGACC 48163 |||||||||||||| ||||| Sbjct 210807 GCAAAATCACAATGTAGACC 210826 >seq1 Length=104615532 Score = 113 bits (124), Expect = 6e-20 Identities = 154/214 (72%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 48528 TTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATAT 48587 || || || |||||||| ||||| |||||||| || |||| ||||| || |||| | Sbjct 19031148 TTTTCGTTAACTATTCCGTCACTGGCAGCAAAGAAGGCTAGCACATGAGAGATGAAATGT 19031089 Query 48588 TTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCA 48647 | |||| |||| || | ||||| | || || |||| ||| ||||| || Sbjct 19031088 CTCTCGTCCTTCTTCAGATTTTCCCAGTGTGGCAAGTCCTTGGATAAATCAACTTCCTCG 19031029 Query 48648 GCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATT 48707 |||||||| || ||||||||||| || || ||||| | |||||||||| || ||||| Sbjct 19031028 GCTGTCCAGAACGATGCCTCTGCCTTCTTGTACATTTGCCATATATCATGATACTGGATG 19030969 Query 48708 GGGAAAATAACAAATCTATTTGGATTTT-TTGCA 48740 || || | |||||| | |||| |||| ||||| Sbjct 19030968 GGAAATACAACAAAGCGCCTTGGGTTTTCTTGCA 19030935 Score = 111 bits (122), Expect = 2e-19 Identities = 158/222 (71%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||| || || || | ||| ||| ||||| || || ||||| | || | || ||| Sbjct 19031883 TCATCCCTGCTGATAAGTTCATTACTGAATGTAAGTCCAGGCATGATCCCCCTCTTCTTG 19031824 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284 ||||| ||||| || || ||| |||| ||||| || ||||||||||| ||||| | Sbjct 19031823 AGCCAGAATATGGCGGCAAAACTTCCACTGAAGAAGATTCCTTCTACGGCAGCAAAGCCA 19031764 Query 48285 GTAAGTCTCTCTCCGTAACTGGCTTCGTTGT---GTATCCACCGTTGTGCCCAATCAGCC 48341 || || |||||||||| | | ||| | || ||||| ||||| || ||| Sbjct 19031763 ACAACTCGCTCTCCGTAAGTAGATTCCTCGTCACCGATCCATTTAATAGCCCAGTCGGCC 19031704 Query 48342 TTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 48383 ||||| || ||||| ||||||||||| || ||||| || ||| Sbjct 19031703 TTCTTTTTCACACAGGGCATTGTTTCAATGGCATTGAATAGA 19031662 >seq5 Length=54553330 Score = 105 bits (116), Expect = 9e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| ||||||| |||||||| |||||||| || |||| ||||||||||| || | Sbjct 25744981 TCCAGGCGTAGAAGTGCATGCTGGTCAGTTTTCCGTAGTTAGGCTCGGCTATATGGATGT 25744922 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 ||| |||||||| ||||| ||||| |||||||| || || |||||||| | | || | Sbjct 25744921 TCAGAGACTGACTCTGATCAATGAACGCTCCTCTGTCGGCTGCCATTTTGAGCACTGTTT 25744862 Query 76969 TTTGAGGAATTTCCCA 76984 | || | |||||||| Sbjct 25744861 TCTGGGAGATTTCCCA 25744846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694625044548960