Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1 125 1e-23 seq1597 123 4e-23 seq5 96.9 5e-15 >seq1 Length=104615532 Score = 125 bits (138), Expect = 1e-23 Identities = 157/214 (73%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 47017 TTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATAT 47076 || || || |||||||| ||||| |||||||| || || | ||||| || |||| | Sbjct 19031148 TTTTCGTTAACTATTCCGTCACTGGCAGCAAAGAAGGCTAGCACATGAGAGATGAAATGT 19031089 Query 47077 TTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCA 47136 | || || | |||| || | ||||| | || || |||| ||| ||||| || Sbjct 19031088 CTCTCGTCCTTCTTCAGATTTTCCCAGTGTGGCAAGTCCTTGGATAAATCAACTTCCTCG 19031029 Query 47137 GCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTGGATC 47196 ||||||||||| || |||||||| || || ||||| | |||||||||| |||| ||||| Sbjct 19031028 GCTGTCCAGAACGATGCCTCTGCCTTCTTGTACATTTGCCATATATCATGATACTGGATG 19030969 Query 47197 GGAAAAATAACAAATCTATTTGGATTTT-TTGCA 47229 ||||| | |||||| | |||| |||| ||||| Sbjct 19030968 GGAAATACAACAAAGCGCCTTGGGTTTTCTTGCA 19030935 Score = 120 bits (132), Expect = 4e-22 Identities = 160/222 (72%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||| || || || | ||| ||| ||||| || |||||||| | || | ||| ||| Sbjct 19031883 TCATCCCTGCTGATAAGTTCATTACTGAATGTAAGTCCAGGCATGATCCCCCTCTTCTTG 19031824 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| ||||| || || ||| |||| ||||| || |||||||| || || || | Sbjct 19031823 AGCCAGAATATGGCGGCAAAACTTCCACTGAAGAAGATTCCTTCTACGGCAGCAAAGCCA 19031764 Query 46774 ACAAGTCTCTCTCCGTAACTGGCATCATTATGA---ATCCACCTTTGAGCCCAATCAGCC 46830 |||| || |||||||||| | | || | | | ||||| | |||||| || ||| Sbjct 19031763 ACAACTCGCTCTCCGTAAGTAGATTCCTCGTCACCGATCCATTTAATAGCCCAGTCGGCC 19031704 Query 46831 TTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 46872 || || || ||||| ||||||||||| || ||||| || ||| Sbjct 19031703 TTCTTTTTCACACAGGGCATTGTTTCAATGGCATTGAATAGA 19031662 Score = 93.3 bits (102), Expect = 6e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 46900 TATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAAT 46959 || || || || |||||||| |||||||||||||| ||||| || || || || || ||| Sbjct 19031497 TAAGTGTCAATCAAAAGACTGTACATTTCTGAATGGATGTTCTCCATGGCAATTTGGAAT 19031438 Query 46960 CCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATC 47005 || |||||||||||||||||||| || || ||| | | ||||| Sbjct 19031437 CCATAAAAACATCTTGCTTCAGTGGATTGGACTTCTTTGCTAAATC 19031392 >seq1597 Length=274804 Score = 123 bits (136), Expect = 4e-23 Identities = 161/222 (73%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||| || || || | ||| ||| ||||| || |||||||| | || | ||| || Sbjct 211178 TCATCCCTGCTGATAAGTTCATTACTGAATGTAAGTCCAGGCATGATACCCCTCTTCTTC 211237 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| ||||| || || ||| |||| ||||| || |||||||| || || || | Sbjct 211238 AGCCAGAATATGGCGGCAAAACTTCCACTGAAGAAGATTCCTTCTACGGCAGCAAAGCCA 211297 Query 46774 ACAAGTCTCTCTCCGTAACTGG---CATCATTATGAATCCACCTTTGAGCCCAATCAGCC 46830 |||| || |||||||||| | | | || | | |||||| | |||||| || ||| Sbjct 211298 ACAACTCGCTCTCCGTAAGTAGATTCCTCGTCACCAATCCATTTAATAGCCCAGTCGGCC 211357 Query 46831 TTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 46872 || ||||| ||||| ||||||||||| || ||||| || ||| Sbjct 211358 TTCTTCTTCACACAGGGCATTGTTTCAATGGCATTGAATAGA 211399 Score = 122 bits (134), Expect = 1e-22 Identities = 156/214 (73%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 47017 TTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATAT 47076 || || || ||||||||||||||||||||||| || || | || || || |||| | Sbjct 211909 TTTTCGTTAACTATTCCATCACTAGCAGCAAAGAAGGCTAGCACGTGAGAGATGAAATGT 211968 Query 47077 TTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCA 47136 | || || | |||| || | ||||| | || || |||| ||| ||||| || Sbjct 211969 CTCTCGTCCTTCTTCAGATTTTCCCAGTGTGGCAAGTCCTTGGATAAATCAACTTCCTCG 212028 Query 47137 GCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTGGATC 47196 ||||||||||| || ||||| || || || ||||| | |||||||||| |||| ||||| Sbjct 212029 GCTGTCCAGAACGATGCCTCCGCCTTCTTGTACATTTGCCATATATCATGATACTGGATG 212088 Query 47197 GGAAAAATAACAAATCTATTTGGATTTT-TTGCA 47229 || || | |||||| | |||| |||| ||||| Sbjct 212089 GGGAATACAACAAAGCGCCTTGGGTTTTCTTGCA 212122 Score = 93.3 bits (102), Expect = 6e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 46900 TATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAAT 46959 || || || || |||||||| |||||||||||||| ||||| || || || || || ||| Sbjct 211564 TAAGTGTCAATCAAAAGACTGTACATTTCTGAATGGATGTTCTCCATGGCAATTTGGAAT 211623 Query 46960 CCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATC 47005 || |||||||||||||||||||| || || ||| | | ||||| Sbjct 211624 CCATAAAAACATCTTGCTTCAGTGGATTGGACTTCTTTGCTAAATC 211669 >seq5 Length=54553330 Score = 96.9 bits (106), Expect = 5e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| ||||||| |||||||| || ||||| || | || ||||||||||| || | Sbjct 25744981 TCCAGGCGTAGAAGTGCATGCTGGTCAGTTTTCCGTAGTTAGGCTCGGCTATATGGATGT 25744922 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 ||| |||||||| ||||| ||||| |||||||| || || |||||||| | | || | Sbjct 25744921 TCAGAGACTGACTCTGATCAATGAACGCTCCTCTGTCGGCTGCCATTTTGAGCACTGTTT 25744862 Query 75564 TTTGAGGAATTTCCCA 75579 | || | |||||||| Sbjct 25744861 TCTGGGAGATTTCCCA 25744846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712889494044480