Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq9 143 6e-29 >seq9 Length=97764462 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||| ||||| |||||||| |||||||||||||||| | ||| | |||||| Sbjct 51006802 AGAACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAATCGGACAGAGTGCGGCCATCT 51006743 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| ||||| ||||| | | |||||| || | | |||||| || || || Sbjct 51006742 TCAAGCTGTTTTCCGGCAAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCTTTGTCC 51006683 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || ||||| || ||| | || | ||||||| ||| |||||||| || || ||| Sbjct 51006682 TGGATTTTAGCCTTAACATTTTCGATAGTGTCTGAGGGCTCAACTTCAAGTGTGATTGTT 51006623 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| |||||||| |||||||||| |||||| Sbjct 51006622 TTGCCAGTGAGAGTTTTCACGAAGATCTGCAT 51006591 Score = 123 bits (136), Expect = 6e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || |||||||| |||||||||||||||| | ||| | |||||||| || ||| ||| Sbjct 51007015 GTGGACTCTTTCTGGATGTTGTAATCGGACAGAGTGCGGCCATCTTCAAGCTGTTTTCCG 51006956 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || ||||| | | |||||| || | | |||||| || || || || ||||| || Sbjct 51006955 GCAAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTA 51006896 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| | || | ||||||| ||| |||||||| || || |||||||| |||||||| Sbjct 51006895 ACATTTTCGATAGTGTCTGAGGGCTCAACTTCAAGTGTGATTGTTTTGCCAGTGAGAGTT 51006836 Query 152088 TTCACGAAGACCTGCATT 152105 || || || | ||||||| Sbjct 51006835 TTGACAAATATCTGCATT 51006818 Score = 104 bits (114), Expect = 5e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||||| ||| || |||||||| |||||||| ||||||||||| ||||| || | Sbjct 51001746 CTGAGTCGGAGCACCAGATGAAGTGTAGACTCCTTTTGGATGTTATAATCCAGCAAGGAC 51001687 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || |||| |||| ||| || || || || | ||||||||||| | | ||||||| Sbjct 51001686 CTATCATCCTCTAATTGTTTACCTGCAAATATTAATCTCTGCTGGTCTACAGGGATTCCT 51001627 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || ||||||| ||| || | | || || | ||| || |||| Sbjct 51001626 TCCTTCTCCATGATTTTTTCTTTCACCTTTTTGACCTCCTCCGCGGCCTCAACGTCAATG 51001567 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || || || | |||||| || |||| ||||||| Sbjct 51001566 GTGATCGTCTTTCCAGTTAAAGTCTTTACAAAGATCTGCATT 51001525 Score = 102 bits (112), Expect = 2e-16 Identities = 166/228 (73%), Gaps = 12/228 (5%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | ||| || | || ||||| ||||||||||| ||||| ||| | | ||| Sbjct 51001975 CCTAAGACGGAGCACCAAGTGGAGAGTTGACTCTTTTTGTATGTTATAA--GCTTTCAGT 51001918 Query 151943 TCTCCCATC-TTCTAG-GCT-TTTCCCGGCGAAGAT-AAGCCTCTGCTGGTCCGCCGAGA 151998 | || ||| | || | ||| ||||||||| || || |||| | ||||| || | | | Sbjct 51001917 T-GCCGATCGTCCTCGAGCTGTTTCCCGGCAAAAATCAAGCGT-TGCTGATCAGGTGGTA 51001860 Query 151999 TTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT--CTCTAC 152056 |||| ||||| |||||||| || | ||| || |||||| ||| || | || ||||| Sbjct 51001859 TTCCCTCCTTGTCTTGAATCTTCTTTTTCACGTTCTCTATGCTATC--ATCTTCATCTAC 51001802 Query 152057 TTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || ||||| || ||||| || ||||| |||| |||||| Sbjct 51001801 ATCTAGAGTGATGGTTTTACCAGTGAGTGTTTTCACAAAGATCTGCAT 51001754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153746306805169