Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq9 122 6e-23 seq3 102 6e-17 >seq9 Length=97764462 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 |||||||||| | | |||| |||||||||| |||||| || |||||||| ||| Sbjct 51002208 CCCCCTCTCAAACGGAGTACCAAGTGAAGCGTGGACTCCTTCTGTATGTTGTAGTCGCTC 51002149 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 ||| ||| | || || || ||||||||||||||||||||||| || || || || Sbjct 51002148 AGTATGCGGTGATCCTCGAGTTGCTTCCCGGCAAAGATCAAACGTTGTTGGTCAAGGGGT 51002089 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | || || ||||| ||||||| || | || | || |||| || || || Sbjct 51002088 ATTCCCTCTTTTTCAAGGATCTTCTTTTTAACATTTTCGATACTGTCATCGCCCTCTACA 51002029 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | | ||||| |||||||| || || |||||||||||||||||||| Sbjct 51002028 TTTAAAGTAATTGTCTTTCCTGTAAGTGTCTTCACGAAGATTTGCAT 51001982 Score = 122 bits (134), Expect = 6e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| ||||||| | | |||| || || ||| ||| || |||||||||||||| Sbjct 51006821 CATTCCTCCTCTCAAACGAAGAACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAATC 51006762 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || || ||||| || |||||||||||||||||||||||||||| Sbjct 51006761 GGACAGAGTGCGGCCATCTTCAAGCTGTTTTCCGGCAAAGATCAAACGCTGCTGATCTGG 51006702 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || || || ||| || || ||| | || | || ||||| | || || Sbjct 51006701 GGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTAACATTTTCGATAGTGTCTGAGGGCTC 51006642 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || | || || || || || ||||| || ||||||||||| |||||| Sbjct 51006641 AACTTCAAGTGTGATTGTTTTGCCAGTGAGAGTTTTCACGAAGATCTGCATG 51006590 Score = 105 bits (116), Expect = 5e-18 Identities = 166/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| || || || | | ||||| ||| || || ||| ||||| ||||| || Sbjct 51001987 TTGCATTCCTCCCCTAAGACGGAGCACCAAGTGGAGAGTTGACTCTTTTTGTATGTTATA 51001928 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 | | ||||| || ||||| || ||||| ||||||||||| ||||| || |||||||| Sbjct 51001927 AGCTTTCAGTTGCCGATCGTCCTCGAGCTGTTTCCCGGCAAAAATCAAGCGTTGCTGATC 51001868 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 | || | || ||||| || ||||||| ||| | |||| ||||| | || | Sbjct 51001867 AGGTGGTATTCCCTCCTTGTCTTGAATCTTCTTTTTC-ACGTTCTCTATGCTATCATCTT 51001809 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || | || || || || || ||||| || ||||| ||||| ||||| Sbjct 51001808 CATCTACATCTAGAGTGATGGTTTTACCAGTGAGTGTTTTCACAAAGATCTGCAT 51001754 Score = 96.9 bits (106), Expect = 2e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 44140 CGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCC 44199 |||| ||| || |||||||||||||||| || ||| | || || ||||| || || Sbjct 51007016 CGTGGACTCTTTCTGGATGTTGTAATCGGACAGAGTGCGGCCATCTTCAAGCTGTTTTCC 51006957 Query 44200 GGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT 44259 |||||||||||||||||||||||||| || | || || || ||| || || ||| Sbjct 51006956 GGCAAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCTTTGTCCTGGATTTTAGCCTT 51006897 Query 44260 CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGT 44319 | || | || ||||| | || || || || | || || || || || ||||| || Sbjct 51006896 AACATTTTCGATAGTGTCTGAGGGCTCAACTTCAAGTGTGATTGTTTTGCCAGTGAGAGT 51006837 Query 44320 CTTCACGAAGATTTGCAT 44337 || || || || ||||| Sbjct 51006836 TTTGACAAATATCTGCAT 51006819 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAAT- 44165 ||| || ||||| |||| | |||||| ||||| || ||||||||||||||| |||| Sbjct 51001756 CATCCCTCCTCTGAGTCGGAGCACCAGATGAAGTGTAGACTCCTTTTGGATGTTATAATC 51001697 Query 44166 CGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 | || || | || || || | || || || ||||| || || | |||||| ||| Sbjct 51001696 CAGCAAG-GACCTATCATCCTCTAATTGTTTACCTGCAAATATTAATCTCTGCTGGTCTA 51001638 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATT 44285 ||| | |||||||| ||| | || || | |||| || | || |||| | Sbjct 51001637 CAGGGATTCCTTCCTTCTCCATGATTTTTTCTTTCACCTTTTTGACCTCCTCCGCGGCCT 51001578 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || | || ||||||||||| || | ||||| || ||||| ||||| Sbjct 51001577 CAACGTCAATGGTGATCGTCTTTCCAGTTAAAGTCTTTACAAAGATCTGCAT 51001526 >seq3 Length=91555047 Score = 102 bits (112), Expect = 6e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || || || ||| |||||| |||||||| || || | ||| | |||| ||| Sbjct 54869508 ACAAGATGGAGTGTGGACTCCTTCTGGATGTTATAGTCTGACAGTGTTCTTCCGTCCTCC 54869449 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | ||| || || ||||||||||| | ||| || |||| || | || ||||| ||| Sbjct 54869448 AACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCCTGG 54869389 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | |||||||| | || ||| || |||| || || ||||| Sbjct 54869388 ATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATGGTCTTG 54869329 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATGA 44339 || || ||||||||||| || || ||||||| Sbjct 54869328 CCTGTCAGGGTCTTCACAAAAATCTGCATGA 54869298 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || || || ||| |||||| |||||||| || || | ||| | |||| ||| Sbjct 54870482 ACAAGATGGAGTGTGGACTCCTTCTGGATGTTATAGTCTGACAGTGTTCTTCCGTCCTCC 54870423 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | ||| || || ||||||||||| | ||| || |||| || | || ||||| ||| Sbjct 54870422 AACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCCTGG 54870363 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | |||||||| | || ||| || |||| ||| || ||||| Sbjct 54870362 ATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTACTTCCAACGTGATGGTCTTG 54870303 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || ||||||||||| || || ||||| Sbjct 54870302 CCTGTCAGGGTCTTCACAAAAATCTGCAT 54870274 Score = 102 bits (112), Expect = 6e-17 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || || ||| ||||| || | | || || || || ||| |||||| |||||||| || Sbjct 54873300 TTACAGTCCTCCTCTGAGACGAAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTATA 54873241 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | ||| | |||| |||| ||| || || ||||||||||| | ||| || || Sbjct 54873240 GTCTGACAGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTC 54873181 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 || || | || ||||| ||| ||||| ||| | | | |||||||| | || Sbjct 54873180 TGGGGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGG 54873121 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || |||| || || ||||| || || ||||||||||| || || ||||| Sbjct 54873120 TTCTACTTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54873067 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || || || ||| |||||| |||||||| || || | ||| | |||| ||| Sbjct 54870837 ACAAGATGGAGTGTGGACTCCTTCTGGATGTTATAGTCTGACAGTGTTCTTCCGTCCTCC 54870778 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | ||| || || ||||||||||| | ||| || |||| || | || ||||| ||| Sbjct 54870777 AACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCCTGG 54870718 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | |||||||| | || ||| || |||| || || ||||| Sbjct 54870717 ATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATGGTCTTG 54870658 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || ||||||||||| || || ||||| Sbjct 54870657 CCTGTCAGGGTCTTCACAAAAATCTGCAT 54870629 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || || || ||| |||||| |||||||| || || | ||| | |||| ||| Sbjct 54872704 ACAAGATGGAGTGTGGACTCCTTCTGGATGTTATAGTCTGACAGTGTTCTTCCGTCCTCC 54872645 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | ||| || || ||||||||||| | ||| || |||| || | || ||||| ||| Sbjct 54872644 AACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCCTGG 54872585 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | |||||||| | || ||| || |||| || || ||||| Sbjct 54872584 ATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATGGTCTTG 54872525 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || ||||||||||| || || ||||| Sbjct 54872524 CCTGTCAGGGTCTTCACAAAAATCTGCAT 54872496 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || || || ||| |||||| || ||||| || || | ||| | |||| ||| Sbjct 54872343 ACAAGATGGAGTGTGGACTCCTTCTGAATGTTATAGTCTGACAGTGTTCTTCCGTCCTCC 54872284 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | ||| || || ||||||||||| | ||| || |||| || | || ||||| ||| Sbjct 54872283 AACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCCTGG 54872224 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | |||||||| | || ||| || |||| || || ||||| Sbjct 54872223 ATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATGGTCTTG 54872164 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || ||||||||||| || || ||||| Sbjct 54872163 CCTGTCAGGGTCTTCACAAAAATCTGCAT 54872135 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||| || ||||| || || | ||| | |||| |||| ||| || || ||||| Sbjct 54872126 CTCCTTCTGAATGTTATAGTCTGACAGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAA 54872067 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 |||||| | ||| || |||| || | || ||||| ||| ||||| ||| | | Sbjct 54872066 GATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGACATT 54872007 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | |||||||| | || ||| || |||| || || ||||| || || ||||||||||| Sbjct 54872006 CTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCAC 54871947 Query 44326 GAAGATTTGCAT 44337 || || ||||| Sbjct 54871946 AAAAATCTGCAT 54871935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359968291977063