Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq9 167 6e-36 >seq9 Length=97764462 Score = 167 bits (184), Expect = 6e-36 Identities = 161/207 (78%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||||||||||||||| || ||||| ||||| || || || || ||||||| Sbjct 51006594 CAGATCTTCGTGAAAACTCTCACTGGCAAAACAATCACACTTGAAGTTGAGCCCTCAGAC 51006653 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || || || ||||||||||| |||||||| || || ||||| Sbjct 51006654 ACTATCGAAAATGTTAAGGCTAAAATCCAGGACAAAGAGGGAATCCCCCCAGATCAGCAG 51006713 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| |||||||||||||| |||||||| | ||||| ||||||| ||| || Sbjct 51006714 CGTTTGATCTTTGCCGGAAAACAGCTTGAAGATGGCCGCACTCTGTCCGATTACAACATC 51006773 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || ||||| || || || ||| | ||| Sbjct 51006774 CAGAAAGAGTCCACTCTCCATTTGGTT 51006800 Score = 152 bits (168), Expect = 1e-31 Identities = 150/194 (77%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || ||||||||||| || ||||| ||||| || || || || ||||||| Sbjct 51006822 CAGATATTTGTCAAAACTCTCACTGGCAAAACAATCACACTTGAAGTTGAGCCCTCAGAC 51006881 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || || || ||||||||||| |||||||| || || ||||| Sbjct 51006882 ACTATCGAAAATGTTAAGGCTAAAATCCAGGACAAAGAGGGAATCCCCCCAGATCAGCAG 51006941 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| |||||||||||||| |||||||| | ||||| ||||||| ||| || Sbjct 51006942 CGTTTGATCTTTGCCGGAAAACAGCTTGAAGATGGCCGCACTCTGTCCGATTACAACATC 51007001 Query 178104 CAAAAAGAATCAAC 178117 || ||||| || || Sbjct 51007002 CAGAAAGAGTCCAC 51007015 Score = 122 bits (134), Expect = 2e-22 Identities = 153/207 (74%), Gaps = 5/207 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA--AAGCTCAG 177981 || || || |||||||| ||||| || ||||| ||||| || || || || ||| | | Sbjct 51001757 CAGATCTTTGTGAAAACACTCACTGGTAAAACCATCACTCTAGATGTAGATGAAGAT--G 51001814 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | | ||| |||||||| ||| | |||||||| ||||| || ||||| || || || |||| Sbjct 51001815 ATAGCATAGAGAACGTGAAAAAGAAGATTCAAGACAAGGAGGGAATACCACCTGATCAGC 51001874 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 |||| | || || ||||| ||||||||||| || | || || | ||||||| Sbjct 51001875 AACGCTTGATTTTTGCCGGGAAACAGCTCGAGGACGATCGGCAACTGAAAGCTTATAACA 51001934 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 | |||||||| ||||| || || |||| Sbjct 51001935 TACAAAAAGAGTCAACTCTCCA-CTTG 51001960 Score = 96.9 bits (106), Expect = 8e-15 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||| | || ||||| ||||||||| | || || || | | || Sbjct 51001529 CAGATCTTTGTAAAGACTTTAACTGGAAAGACGATCACCATTGACGTTGAGGCCGCGGAG 51001588 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || | || || ||| |||| || ||| || |||||||||||| |||||||| Sbjct 51001589 GAGGTCAAAAAGGTGAAAGAAAAAATCATGGAGAAGGAAGGAATCCCTGTAGACCAGCAG 51001648 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGC-CGATTATAACGT 178102 || | || || || || ||||| | || |||| ||| | ||||| ||||||||| | Sbjct 51001649 AGATTAATATTTGCAGGTAAACAATTAGAGGATGATAGGTC-CTTGCTGGATTATAACAT 51001707 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||| || || ||||| ||||| || | |||||||| Sbjct 51001708 CCAAAAGGAGTCTACACTTCATCTGGTGCTCCGACTCAGA 51001747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203653484480566