Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pinctada_20martensii_20[genbank_20GCA_5F002216045.1_202017-07-20] 5,039 sequences; 990,984,031 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq3 98.7 9e-16 >seq3 Length=91555047 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| || ||| ||||||||| ||||||||||| || Sbjct 54870500 CCTCCTCGGAGACGAAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTATAGTCTGAC 54870441 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || | |||| || | ||| || || || || |||| | ||||||||| | |||| Sbjct 54870440 AGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGA 54870381 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | |||||| ||| ||| || ||| | | | ||||| | || || Sbjct 54870380 ATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTACT 54870321 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| ||| || || || || ||||| ||||| || ||||||||||| Sbjct 54870320 TCCAACGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54870274 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| || ||| ||||||||||||||||||||| || Sbjct 54872361 CCTCCTCGGAGACGAAGTACAAGATGGAGTGTGGACTCCTTCTGAATGTTATAGTCTGAC 54872302 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || | |||| || | ||| || || || || |||| | ||||||||| | |||| Sbjct 54872301 AGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGA 54872242 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | |||||| ||| ||| || ||| | | | ||||| | || || Sbjct 54872241 ATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTACT 54872182 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || ||||| ||||| || ||||||||||| Sbjct 54872181 TCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54872135 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| || ||| ||||||||| ||||||||||| || Sbjct 54869526 CCTCCTCGGAGACGAAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTATAGTCTGAC 54869467 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || | |||| || | ||| || || || || |||| | ||||||||| | |||| Sbjct 54869466 AGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGA 54869407 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | |||||| ||| ||| || ||| | | | ||||| | || || Sbjct 54869406 ATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTACT 54869347 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| || || || || || ||||| ||||| || |||||||||||| Sbjct 54869346 TCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAAATCTGCATG 54869299 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| || ||| ||||||||| ||||||||||| || Sbjct 54870855 CCTCCTCGGAGACGAAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTATAGTCTGAC 54870796 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || | |||| || | ||| || || || || |||| | ||||||||| | |||| Sbjct 54870795 AGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGA 54870736 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | |||||| ||| ||| || ||| | | | ||||| | || || Sbjct 54870735 ATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTACT 54870676 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || ||||| ||||| || ||||||||||| Sbjct 54870675 TCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54870629 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| || ||| ||||||||| ||||||||||| || Sbjct 54872722 CCTCCTCGGAGACGAAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTATAGTCTGAC 54872663 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || | |||| || | ||| || || || || |||| | ||||||||| | |||| Sbjct 54872662 AGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGA 54872603 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | |||||| ||| ||| || ||| | | | ||||| | || || Sbjct 54872602 ATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTACT 54872543 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || ||||| ||||| || ||||||||||| Sbjct 54872542 TCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54872496 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || ||||| || ||| ||||||||| ||||||||||| || || || | Sbjct 54873284 AGACGAAGTACAAGATGGAGTGTGGACTCCTTCTGGATGTTATAGTCTGACAGTGTTCTT 54873225 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || | ||| || || || || |||| | ||||||||| | ||||| | |||| Sbjct 54873224 CCGTCCTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCTGGGGGAATTCCCTCC 54873165 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || ||| ||| || ||| | | | ||||| | || || |||| || Sbjct 54873164 TTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTG 54873105 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| ||||| || ||||||||||| Sbjct 54873104 ATGGTCTTGCCTGTCAGGGTCTTCACAAAAATCTGCAT 54873067 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||||||||||||||| || || || | |||| || | ||| || || || || Sbjct 54872126 CTCCTTCTGAATGTTATAGTCTGACAGTGTTCTTCCGTCCTCCAACTGTTTACCAGCAAA 54872067 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 |||| | ||||||||| | ||||| | |||||| ||| ||| || ||| | Sbjct 54872066 GATCAATCTCTGTTGGTCTGGGGGAATTCCCTCCTTATCCTGGATCTTGGCCTTGACATT 54872007 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | | ||||| | || || |||| || || || || || ||||| ||||| || Sbjct 54872006 CTCAATGGTGTCAGAGGGTTCTACTTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCAC 54871947 Query 41851 GAAAATCTGCAT 41862 ||||||||||| Sbjct 54871946 AAAAATCTGCAT 54871935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462274880626800