Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pleurobrachia_20bachei_20[genbank_20GCA_5F000695325.1_202014-05-21] 21,979 sequences; 156,121,975 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq13598 120 3e-22 seq17776 84.2 2e-11 seq17654 84.2 2e-11 seq15593 84.2 2e-11 seq2440 84.2 2e-11 >seq13598 Length=1024 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || |||||||||||||||||| |||| || || ||| Sbjct 243 ATGCAGATTTTCGTGAAGACCCTTACGGGCAAAACCATCACCCTCGAGGTTGAGCCCAGT 184 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||| | | | | |||||| || || | ||||||||||| |||||| | ||||| Sbjct 183 GACTCCATCGAGAATGTCAAGGCCAAGATCCAGGACAAAGAGGGAATCCCCCCTGACCAA 124 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | |||| ||| || || ||||| || || | | ||||| | ||||||||| Sbjct 123 CAGAGGTTGATCTTCGCTGGAAAGCAGCTCGAGGATGGAAGGACCCTGAGTGACTACAAC 64 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| ||| || || || || Sbjct 63 ATCCAGAAGGAGAGCACCCTTCACCTTGT 35 >seq17776 Length=453 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || ||||| || || ||||||||| | || || || ||| Sbjct 228 AATGCAGATCTTCGTGAAGACTCTCACCGGAAAGACCATCACCCTTGAGGTTGAGCCCAG 169 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | | |||| |||||| || || | ||||||||||| |||||| | |||| Sbjct 168 CGACTCCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAAGAGGGAATCCCCCCTGACC 110 Query 40808 AGCAACGACTCATCTACGCGGGCAA 40832 | || | ||||||| ||| || || Sbjct 109 AACAGAGGCTCATCTTCGCTGGTAA 85 >seq17654 Length=470 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || ||||| || || ||||||||| | || || || ||| Sbjct 239 AATGCAGATCTTCGTGAAGACTCTCACCGGAAAGACCATCACCCTTGAGGTTGAGCCCAG 180 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | | |||| |||||| || || | ||||||||||| |||||| | |||| Sbjct 179 CGACTCCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAAGAGGGAATCCCCCCTGACC 121 Query 40808 AGCAACGACTCATCTACGCGGGCAA 40832 | || | ||||||| ||| || || Sbjct 120 AACAGAGGCTCATCTTCGCTGGTAA 96 >seq15593 Length=744 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || ||||| || || ||||||||| | || || || ||| Sbjct 214 AATGCAGATCTTCGTGAAGACTCTCACCGGAAAGACCATCACCCTTGAGGTTGAGCCCAG 155 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | | |||| |||||| || || | ||||||||||| |||||| | |||| Sbjct 154 CGACTCCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAAGAGGGAATCCCCCCTGACC 96 Query 40808 AGCAACGACTCATCTACGCGGGCAA 40832 | || | ||||||| ||| || || Sbjct 95 AACAGAGGCTCATCTTCGCTGGTAA 71 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || ||||| || || ||||||||| | || || || ||| Sbjct 547 AATGCAGATCTTCGTGAAGACTCTCACCGGAAAGACCATCACCCTTGAGGTTGAGCCCAG 488 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | | |||| |||||| || || | ||||||||||| |||||| | |||| Sbjct 487 CGACTCCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAAGAGGGAATCCCCCCTGACC 429 Query 40808 AGCAACGACTCATCTACGCGGGCAA 40832 | || | ||||||| ||| || || Sbjct 428 AACAGAGGCTCATCTTCGCTGGTAA 404 >seq2440 Length=13695 Score = 84.2 bits (92), Expect = 2e-11 Identities = 92/120 (77%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||||||||||||||||||| |||| || || ||| Sbjct 119 ATGCAGATTTTCGTGAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTTGAGCCCAGT 60 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | | |||| |||||| || || | ||||||||||| |||||| | ||||| Sbjct 59 GACTCCATCGAGAACG-TCAAGGCTAAGATCCAGGACAAAGAGGGAATCCCCCCTGACCA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515077649965040