Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pleurobrachia_20bachei_20[genbank_20GCA_5F000695325.1_202014-05-21] 21,979 sequences; 156,121,975 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1090 102 7e-17 seq61 87.8 2e-12 >seq1090 Length=28224 Score = 102 bits (112), Expect = 7e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 23352 TCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTT 23411 |||| || || || || ||||||||||| ||||| || || | || || ||||||| | Sbjct 5118 TCATGAACAGGTCAGGAATCCATAGAGCATAGAAGAGGTCCCTAGCTCGTGCCTCCTCCT 5177 Query 23412 TGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGT 23471 |||| || ||||| ||||||||| ||||| ||||| ||||| ||||| || || || | Sbjct 5178 TGCCAGTATTCTTCCTCAAATCCAGGAAGTCAAACACATCCGCGTGCCAAGGTTCCAGAT 5237 Query 23472 AAACGGCAAACGCGCCCGGTCTCT 23495 ||| || || | ||| |||| || Sbjct 5238 AAATAGCGAATGAGCCAGGTCGCT 5261 >seq61 Length=124260 Score = 87.8 bits (96), Expect = 2e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 57756 GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTG 57815 ||||| || || || || |||||||| ||||| ||||||||||| |||||||| || || Sbjct 5064 GAAGTTCAGGTCACAGAAGCGAGATGTTTTTATGGATTTCAAGTTGCCATTGAGAATGTA 5123 Query 57816 CATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGG 57858 || ||||||||||| || || || || || | ||| | |||| Sbjct 5124 CACTCAGAAATGTACTCTCTTCTAATTGACATGTATATCAAGG 5166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445643931253680