Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pleurobrachia_20bachei_20[genbank_20GCA_5F000695325.1_202014-05-21] 21,979 sequences; 156,121,975 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq61 87.8 2e-12 seq1090 84.2 3e-11 >seq61 Length=124260 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/168 (73%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 33659 CTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGC 33718 |||||||||||| || |||| ||| || ||||| ||||| ||||| || || ||| Sbjct 5559 CTTTTTAAGCCAGAAAATGGCAGCAAAAGATCCACTGAAGAATATTCCCTCAACACTAGC 5500 Query 33719 AAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGT---CATGTATCCACTTTTGAGCCCA 33775 || ||||| | ||||||| | ||| |||| |||| ||||| || |||||| Sbjct 5499 GAATGCAAT--GACTCTCTCGGGGAATGGC-CTGTCTGCATGCATCCATTTGAAAGCCCA 5443 Query 33776 ATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 33823 || ||||||||||| | |||||||| || || || ||||| || || Sbjct 5442 CTCAGCCTTCTTTTTGATACAAGGCAGGGTCTCAATCGCATTGAATAG 5395 >seq1090 Length=28224 Score = 84.2 bits (92), Expect = 3e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 63003 GTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 63062 || || || |||||||||||||||||||| | ||| ||||| |||||||| | |||||| Sbjct 4474 GTACATAGGTTACTACACTTGATAGTTCCCAGATTCTGTTGGTTACTCTTCCTATTACAC 4533 Query 63063 GCATCCTTATAAAGAATGAATGGAGTACC 63091 |||||||| || | ||| | || ||||| Sbjct 4534 GCATCCTTGTACACCATGTAGGGGGTACC 4562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629644565487120