Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pleurobrachia_20bachei_20[genbank_20GCA_5F000695325.1_202014-05-21] 21,979 sequences; 156,121,975 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq782 109 1e-18 seq17776 107 4e-18 seq17654 107 4e-18 seq15593 107 4e-18 >seq782 Length=37275 Score = 109 bits (120), Expect = 1e-18 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 165134 GATCCTGTTTTACATATAGAGCTAAGAAGATGGGCAGATATGATGTTGATAGCACCCTTA 165193 || ||||| | ||||||||||| |||| |||||| ||||| ||| | ||||||| || Sbjct 31686 GACCCTGTCCTGCATATAGAGCTCAGAAAATGGGCCGATATCATGGTTCTAGCACCACTA 31745 Query 165194 ACAGCAAACAGTTTAGCGAAGATAGCTAACGGTATCTGTAATAACTTGTTAACGTGTATA 165253 || |||| ||| ||| | ||||| ||| ||||| | || ||||| || ||||| Sbjct 31746 GATGCCAACACGCTAGGCAAGCTGGCTAATGGTCTCTGTGACAATTTGTTGACATGTATC 31805 Query 165254 GTTAGAGCGTGGAATATTAATAAACCTTTACTTTTCTGTCCAGCTATGAATACACTTATG 165313 || || ||| | ||||||| | || |||| |||||||||||||| ||| Sbjct 31806 ACCAGGGCCTGGGACCCATCTAAACCTGTCCTAATCTGCCCAGCTATGAATACTGCGATG 31865 Query 165314 TGGGAACATCCTATTACT 165331 |||||||||||| | ||| Sbjct 31866 TGGGAACATCCTTTAACT 31883 Score = 93.3 bits (102), Expect = 1e-13 Identities = 131/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 165134 GATCCTGTTTTACATATAGAGCTAAGAAGATGGGCAGATATGATGTTGATAGCACCCTTA 165193 || ||||| | ||||||||||| |||| |||||| ||||| ||| | ||||||| || Sbjct 30608 GACCCTGTCCTGCATATAGAGCTCAGAAAATGGGCCGATATCATGGTTCTAGCACCACTA 30667 Query 165194 ACAGCAAACAGTTTAGCGAAGATAGCTAACGGTATCTGTAATAACTTGTTAACGTGTATA 165253 || |||| ||| ||| | ||||| ||| ||||| | || ||||| || ||||| Sbjct 30668 GATGCCAACACGCTAGGCAAGCTGGCTAATGGTCTCTGTGACAATTTGTTGACATGTATC 30727 Query 165254 GTTAGAGCGTGGAATATTAATAAACCTTTACTTTTCTGTCCAGCTATGAATACACTTATG 165313 || || ||| | ||||||| | || |||| |||||||||||||| ||| Sbjct 30728 ACCAGGGCCTGGGACCCATCTAAACCTGTCCTAATCTGCCCAGCTATGAATACTGCGATG 30787 Query 165314 TGGG 165317 |||| Sbjct 30788 TGGG 30791 >seq17776 Length=453 Score = 107 bits (118), Expect = 4e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||| || || ||||||||||| ||||| || ||||| ||||| ||||| ||||| Sbjct 85 TTACCAGCGAAGATGAGCCTCTGTTGGTCAGGGGGGATTCCCTCTTTGTCCTGGATCTTG 144 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || || || || || | || ||||| || || ||||| || || || ||||| || || Sbjct 145 GCCTTGACGTTCTCAATGGAGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTTCCGGTG 204 Query 104537 AGTGTTTTTACAAATATCTGCATT 104560 || || || || || ||||||||| Sbjct 205 AGAGTCTTCACGAAGATCTGCATT 228 >seq17654 Length=470 Score = 107 bits (118), Expect = 4e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||| || || ||||||||||| ||||| || ||||| ||||| ||||| ||||| Sbjct 96 TTACCAGCGAAGATGAGCCTCTGTTGGTCAGGGGGGATTCCCTCTTTGTCCTGGATCTTG 155 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || || || || || | || ||||| || || ||||| || || || ||||| || || Sbjct 156 GCCTTGACGTTCTCAATGGAGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTTCCGGTG 215 Query 104537 AGTGTTTTTACAAATATCTGCATT 104560 || || || || || ||||||||| Sbjct 216 AGAGTCTTCACGAAGATCTGCATT 239 >seq15593 Length=744 Score = 107 bits (118), Expect = 4e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||| || || ||||||||||| ||||| || ||||| ||||| ||||| ||||| Sbjct 71 TTACCAGCGAAGATGAGCCTCTGTTGGTCAGGGGGGATTCCCTCTTTGTCCTGGATCTTG 130 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || || || || || | || ||||| || || ||||| || || || ||||| || || Sbjct 131 GCCTTGACGTTCTCAATGGAGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTTCCGGTG 190 Query 104537 AGTGTTTTTACAAATATCTGCATT 104560 || || || || || ||||||||| Sbjct 191 AGAGTCTTCACGAAGATCTGCATT 214 Score = 107 bits (118), Expect = 4e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||| || || ||||||||||| ||||| || ||||| ||||| ||||| ||||| Sbjct 404 TTACCAGCGAAGATGAGCCTCTGTTGGTCAGGGGGGATTCCCTCTTTGTCCTGGATCTTG 463 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || || || || || | || ||||| || || ||||| || || || ||||| || || Sbjct 464 GCCTTGACGTTCTCAATGGAGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTTCCGGTG 523 Query 104537 AGTGTTTTTACAAATATCTGCATT 104560 || || || || || ||||||||| Sbjct 524 AGAGTCTTCACGAAGATCTGCATT 547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151074159374132