Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pleurobrachia_20bachei_20[genbank_20GCA_5F000695325.1_202014-05-21] 21,979 sequences; 156,121,975 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1715 136 3e-27 seq298 136 3e-27 seq19553 104 2e-17 seq13598 87.8 1e-12 >seq1715 Length=19417 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||| ||||||||||||||||||||| || |||||||| Sbjct 16811 AAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 16870 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 16871 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 16905 >seq298 Length=76156 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||| ||||||||||||||||||||| || |||||||| Sbjct 2951 AAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 3010 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 3011 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 3045 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||| ||||||||||||||||||||| || |||||||| Sbjct 9689 AAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 9748 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 9749 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 9783 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||| ||||||||||||||||||||| || |||||||| Sbjct 12311 AAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 12370 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 12371 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 12405 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||| ||||||||||||||||||||| || |||||||| Sbjct 75357 AAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 75416 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 75417 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 75451 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||| ||||||||||||||||||||| || |||||||| Sbjct 20574 AAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 20633 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||| |||||||||||||||||||||| Sbjct 20634 TAATCCATTCATCCGCGTCACTAATTAGATGACGA 20668 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||| ||||||||||||||||||||| || |||||||| Sbjct 32458 AAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 32517 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||| |||||||||||||||||||||| Sbjct 32518 TAATCCATTCATCCGCGTCACTAATTAGATGACGA 32552 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||| ||||||||||||||||||||| || |||||||| Sbjct 46164 AAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 46223 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||| |||||||||||||||||||||| Sbjct 46224 TAATCCATTCATCCGCGTCACTAATTAGATGACGA 46258 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||| ||||||||||||||||||||| || |||||||| Sbjct 58048 AAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 58107 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||| |||||||||||||||||||||| Sbjct 58108 TAATCCATTCATCCGCGTCACTAATTAGATGACGA 58142 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||||||||| |||||||||||||||||||||||| Sbjct 23550 CTCTCTTTTCAAAGTGCTTTTCATCTTTCCCTCATGGTACTTGTTCGCTATCGGTCTCGT 23609 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 23610 GCCAATATTTAGCTTTA 23626 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||||||||| |||||||||||||||||||||||| Sbjct 35434 CTCTCTTTTCAAAGTGCTTTTCATCTTTCCCTCATGGTACTTGTTCGCTATCGGTCTCGT 35493 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 35494 GCCAATATTTAGCTTTA 35510 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||||||||| |||||||||||||||||||||||| Sbjct 49140 CTCTCTTTTCAAAGTGCTTTTCATCTTTCCCTCATGGTACTTGTTCGCTATCGGTCTCGT 49199 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 49200 GCCAATATTTAGCTTTA 49216 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||||||||| |||||||||||||||||||||||| Sbjct 61024 CTCTCTTTTCAAAGTGCTTTTCATCTTTCCCTCATGGTACTTGTTCGCTATCGGTCTCGT 61083 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 61084 GCCAATATTTAGCTTTA 61100 >seq19553 Length=8445 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||||||||| |||||||||||||||||||||||| Sbjct 5218 CTCTCTTTTCAAAGTGCTTTTCATCTTTCCCTCATGGTACTTGTTCGCTATCGGTCTCGT 5277 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 5278 GCCAATATTTAGCTTTA 5294 >seq13598 Length=1024 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 38083 AATCATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGT 38142 ||| |||||| |||| | ||| | || | ||||| ||||||||||| || || |||| Sbjct 9 AATTATTACCCCCTCGGAGACGGAGGACAAGGTGAAGGGTGCTCTCCTTCTGGATGTTGT 68 Query 38143 AATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGAT 38202 | ||| || | | | || || | || ||||| || || || | | ||||| | Sbjct 69 AGTCACTCAGGGTCCTTCCATCCTCGAGCTGCTTTCCAGCGAAGATCAACCTCTGTTGGT 128 Query 38203 CGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCAC 38262 | | ||||| || ||||||||| || || ||| ||||||| || | || | Sbjct 129 CAGGGGGGATTCCCTCTTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGAGTCACTGG 188 Query 38263 TTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 ||||| || | || || ||||| ||||| | ||| |||||||| ||||||||| Sbjct 189 GCTCAACCTCGAGGGTGATGGTTTTGCCCGTAAGGGTCTTCACGAAAATCTGCATG 244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334857478007549