Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pleurobrachia_20bachei_20[genbank_20GCA_5F000695325.1_202014-05-21] 21,979 sequences; 156,121,975 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq13598 141 2e-28 seq11240 116 7e-21 seq2440 102 2e-16 seq18 100 5e-16 seq4116 95.1 2e-14 seq11112 91.5 3e-13 seq8834 91.5 3e-13 seq7155 91.5 3e-13 seq6774 91.5 3e-13 seq1851 91.5 3e-13 seq615 91.5 3e-13 seq410 91.5 3e-13 >seq13598 Length=1024 Score = 141 bits (156), Expect = 2e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 68231 ATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATC 68290 ||| || || || || || | || | ||| || ||| ||| || |||||||| || || Sbjct 13 ATTACCCCCTCGGAGACGGAGGACAAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTC 72 Query 68291 GGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGG 68350 || ||||| ||||| || | |||||| || ||||| || | || |||||||| || Sbjct 73 ACTCAGGGTCCTTCCATCCTCGAGCTGCTTTCCAGCGAAGATCAACCTCTGTTGGTCAGG 132 Query 68351 TGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTC 68410 || || || || ||||| || ||||| |||||||| |||||||| ||| | || Sbjct 133 GGGGATTCCCTCTTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGAGTCACTGGGCTC 192 Query 68411 TACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || | |||||||||||| ||||| |||||||| ||||| |||||||| Sbjct 193 AACCTCGAGGGTGATGGTTTTGCCCGTAAGGGTCTTCACGAAAATCTGCAT 243 >seq11240 Length=1475 Score = 116 bits (128), Expect = 7e-21 Identities = 115/146 (79%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || ||||| |||| || |||||||| || || || || || ||||| || ||||| Sbjct 330 CTTACCAGCGAAGATGAACCTCTGTTGGTCAGGGGGGATTCCCTCTTTGTCCTGGATCTT 271 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTCCAAGGTGATGGTTTTTCCCG 68436 ||||||||| ||| |||| ||| |||| || || || | ||||||||| ||||| | Sbjct 270 GGCCTTGACGTTCTCAATGGAGTC-GCTGGGCTCAACCTCAAGGGTGATGGTCTTTCCGG 212 Query 68437 TGAGGGTCTTGACGAATATCTGCATT 68462 |||||||||| ||||| ||||||||| Sbjct 211 TGAGGGTCTTCACGAAGATCTGCATT 186 Score = 116 bits (128), Expect = 7e-21 Identities = 115/146 (79%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || ||||| |||| || |||||||| || || || || || ||||| || ||||| Sbjct 665 CTTACCAGCGAAGATGAACCTCTGTTGGTCAGGGGGGATTCCCTCTTTGTCCTGGATCTT 606 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTCCAAGGTGATGGTTTTTCCCG 68436 ||||||||| ||| |||| ||| |||| || || || | ||||||||| ||||| | Sbjct 605 GGCCTTGACGTTCTCAATGGAGTC-GCTGGGCTCAACCTCAAGGGTGATGGTCTTTCCGG 547 Query 68437 TGAGGGTCTTGACGAATATCTGCATT 68462 |||||||||| ||||| ||||||||| Sbjct 546 TGAGGGTCTTCACGAAGATCTGCATT 521 Score = 116 bits (128), Expect = 7e-21 Identities = 115/146 (79%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || ||||| |||| || |||||||| || || || || || ||||| || ||||| Sbjct 1001 CTTACCAGCGAAGATGAACCTCTGTTGGTCAGGGGGGATTCCCTCTTTGTCCTGGATCTT 942 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTCCAAGGTGATGGTTTTTCCCG 68436 ||||||||| ||| |||| ||| |||| || || || | ||||||||| ||||| | Sbjct 941 GGCCTTGACGTTCTCAATGGAGTC-GCTGGGCTCAACCTCAAGGGTGATGGTCTTTCCGG 883 Query 68437 TGAGGGTCTTGACGAATATCTGCATT 68462 |||||||||| ||||| ||||||||| Sbjct 882 TGAGGGTCTTCACGAAGATCTGCATT 857 Score = 116 bits (128), Expect = 7e-21 Identities = 115/146 (79%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || ||||| |||| || |||||||| || || || || || ||||| || ||||| Sbjct 1336 CTTACCAGCGAAGATGAACCTCTGTTGGTCAGGGGGGATTCCCTCTTTGTCCTGGATCTT 1277 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTCCAAGGTGATGGTTTTTCCCG 68436 ||||||||| ||| |||| ||| |||| || || || | ||||||||| ||||| | Sbjct 1276 GGCCTTGACGTTCTCAATGGAGTC-GCTGGGCTCAACCTCAAGGGTGATGGTCTTTCCGG 1218 Query 68437 TGAGGGTCTTGACGAATATCTGCATT 68462 |||||||||| ||||| ||||||||| Sbjct 1217 TGAGGGTCTTCACGAAGATCTGCATT 1192 >seq2440 Length=13695 Score = 102 bits (112), Expect = 2e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 68343 TGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCT 68402 ||||| || || || || || ||||| || ||||| ||||||||| |||||||| ||| Sbjct 1 TGGTCAGGGGGGATTCCCTCTTTGTCCTGGATCTTAGCCTTGACGTTCTCGATGGAGTCA 60 Query 68403 GCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || || || | |||||||||||| |||||||||||||| ||||| |||||||| Sbjct 61 CTGGGCTCAACCTCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTCACGAAAATCTGCAT 119 >seq18 Length=176966 Score = 100 bits (110), Expect = 5e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 |||||||| || | || |||||||| || ||||| || |||||||| || || || ||| Sbjct 84949 CCGGCGAAGATCAACCTCTGTTGGTCAGGGGGAATTCCCTCCTTGTCCTGGATTTTGGCC 84890 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || |||||||| ||| | || || || | |||||| || || ||||||||| Sbjct 84889 TTAACATTCTCGATGGAGTCACTAGGCTCAACCTCGAGGGTGATTGTCTTACCCGTGAGG 84830 Query 68442 GTCTTGACGAATATCTGCAT 68461 |||||||| || || ||||| Sbjct 84829 GTCTTGACAAAGATTTGCAT 84810 >seq4116 Length=7787 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 84453 AGCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 84512 |||||||||||||||||||||| ||||| | || ||||||| || | ||||| ||||||| Sbjct 2928 AGCGCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGCGGGTTCG 2869 Query 84513 AGCCCCACATCGGGC 84527 |||||| |||||||| Sbjct 2868 AGCCCCGCATCGGGC 2854 >seq11112 Length=1516 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 84453 AGCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 84512 |||||||||||||||||||||| ||||| | || ||||||| || | ||||| ||||||| Sbjct 1344 AGCGCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGCGGGTTCG 1403 Query 84513 AGCCCCACATCGGGC 84527 |||||| |||| ||| Sbjct 1404 AGCCCCGCATCTGGC 1418 >seq8834 Length=2304 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 84453 AGCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 84512 || ||||||||||||||||||| ||||| | || ||||||| || | ||||| ||||||| Sbjct 1655 AGTGCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGCGGGTTCG 1596 Query 84513 AGCCCCACATCGGGC 84527 |||||| |||||||| Sbjct 1595 AGCCCCGCATCGGGC 1581 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 84453 AGCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 84512 || ||||||||||||||||||| ||||| | || ||||||| || | ||||| ||||||| Sbjct 1913 AGTGCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGCGGGTTCG 1972 Query 84513 AGCCCCACATCGGGC 84527 |||||| |||||||| Sbjct 1973 AGCCCCGCATCGGGC 1987 >seq7155 Length=3575 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 84453 AGCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 84512 || ||||||||||||||||||| ||||| | || ||||||| || | ||||| ||||||| Sbjct 2944 AGTGCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGCGGGTTCG 3003 Query 84513 AGCCCCACATCGGGC 84527 |||||| |||||||| Sbjct 3004 AGCCCCGCATCGGGC 3018 >seq6774 Length=4004 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 84453 AGCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 84512 || ||||||||||||||||||| ||||| | || ||||||| || | ||||| ||||||| Sbjct 3520 AGTGCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGCGGGTTCG 3579 Query 84513 AGCCCCACATCGGGC 84527 |||||| |||||||| Sbjct 3580 AGCCCCGCATCGGGC 3594 Score = 87.8 bits (96), Expect = 3e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 84457 CCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCC 84516 |||||||||||||||||| ||||| | || ||||||| || | ||||| ||||||||||| Sbjct 3706 CCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGCGGGTTCGAGCC 3765 Query 84517 CCACATCGGGC 84527 || |||||||| Sbjct 3766 CCGCATCGGGC 3776 >seq1851 Length=17985 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 84453 AGCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 84512 || ||||||||||||||||||| ||||| | || ||||||| || | ||||| ||||||| Sbjct 9736 AGTGCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGCGGGTTCG 9795 Query 84513 AGCCCCACATCGGGC 84527 |||||| |||||||| Sbjct 9796 AGCCCCGCATCGGGC 9810 >seq615 Length=44053 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 84453 AGCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 84512 || ||||||||||||||||||| ||||| | || ||||||| || | ||||| ||||||| Sbjct 36556 AGTGCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGCGGGTTCG 36497 Query 84513 AGCCCCACATCGGGC 84527 |||||| |||||||| Sbjct 36496 AGCCCCGCATCGGGC 36482 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 84453 AGCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 84512 || ||||||||||||||||||| ||||| | || ||||||| || | ||||| ||||||| Sbjct 36824 AGTGCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGCGGGTTCG 36883 Query 84513 AGCCCCACATCGGGC 84527 |||||| |||||||| Sbjct 36884 AGCCCCGCATCGGGC 36898 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 84453 AGCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 84512 || ||||||||||||||||||| ||||| | || ||||||| || | ||||| ||||||| Sbjct 37243 AGTGCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGCGGGTTCG 37184 Query 84513 AGCCCCACATCGGGC 84527 |||||| |||||||| Sbjct 37183 AGCCCCGCATCGGGC 37169 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 84453 AGCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 84512 || ||||||||||||||||||| ||||| | || ||||||| || | ||||| ||||||| Sbjct 37714 AGTGCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGCGGGTTCG 37655 Query 84513 AGCCCCACATCGGGC 84527 |||||| |||||||| Sbjct 37654 AGCCCCGCATCGGGC 37640 >seq410 Length=54290 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 84453 AGCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 84512 || ||||||||||||||||||| ||||| | || ||||||| || | ||||| ||||||| Sbjct 52263 AGTGCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGCGGGTTCG 52204 Query 84513 AGCCCCACATCGGGC 84527 |||||| |||||||| Sbjct 52203 AGCCCCGCATCGGGC 52189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921369195765880