Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pleurobrachia_20bachei_20[genbank_20GCA_5F000695325.1_202014-05-21] 21,979 sequences; 156,121,975 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq13598 98.7 1e-15 seq12673 86.0 7e-12 seq7708 86.0 7e-12 seq3472 86.0 7e-12 seq436 86.0 7e-12 seq90 86.0 7e-12 seq52 86.0 7e-12 seq14633 82.4 8e-11 >seq13598 Length=1024 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 42012 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 42071 ||||||||||| || || ||||| ||| ||| |||| | || || |||||||| ||| Sbjct 47 GTGCTCTCCTTCTGGATGTTGTAGTCACTCAGGGTCCTTCCATCCTCGAGCTGCTTTCCA 106 Query 42072 GCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 42131 ||||| || | | ||| ||||| | || | | ||| |||||| ||| || ||| Sbjct 107 GCGAAGATCAACCTCTGTTGGTCAGGGGGGATTCCCTCTTTGTCCTGGATCTTGGCCTTG 166 Query 42132 AGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTC 42191 | || | | | ||| || | || || |||| ||||||||||||||||| || ||| Sbjct 167 ACATTCTCGATGGAGTCACTGGGCTCAACCTCGAGGGTGATGGTTTTGCCCGTAAGGGTC 226 Query 42192 TTTACAAAGATTTGCAT 42208 || || || || ||||| Sbjct 227 TTCACGAAAATCTGCAT 243 >seq12673 Length=1192 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| | || | ||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 980 CTCCCCAACAGGGAATCGAACCCTGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 921 Query 57067 TACTACCGAGGA 57078 ||||| ||||| Sbjct 920 TACTATTGAGGA 909 >seq7708 Length=2992 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| | || | ||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 2317 CTCCCCAACAGGGAATCGAACCCTGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 2258 Query 57067 TACTACCGAGGA 57078 ||||| ||||| Sbjct 2257 TACTATTGAGGA 2246 >seq3472 Length=9750 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| | || | ||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 210 CTCCCCAACAGGGAATCGAACCCTGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 269 Query 57067 TACTACCGAGGA 57078 ||||| ||||| Sbjct 270 TACTATTGAGGA 281 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| | || | ||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 470 CTCCCCAACAGGGAATCGAACCCTGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 411 Query 57067 TACTACCGAGGA 57078 ||||| ||||| Sbjct 410 TACTATTGAGGA 399 >seq436 Length=53577 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| | || | ||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 29819 CTCCCCAACAGGGAATCGAACCCTGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 29760 Query 57067 TACTACCGAGGA 57078 ||||| ||||| Sbjct 29759 TACTATTGAGGA 29748 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| | || | ||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 30225 CTCCCCAACAGGGAATCGAACCCTGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 30166 Query 57067 TACTACCGAGGA 57078 ||||| ||||| Sbjct 30165 TACTATTGAGGA 30154 >seq90 Length=111612 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| | || | ||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 47282 CTCCCCAACAGGGAATCGAACCCTGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 47341 Query 57067 TACTACCGAGGA 57078 ||||| ||||| Sbjct 47342 TACTATTGAGGA 47353 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| | || | ||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 48918 CTCCCCAACAGGGAATCGAACCCTGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 48859 Query 57067 TACTACCGAGGA 57078 ||||| ||||| Sbjct 48858 TACTATTGAGGA 48847 >seq52 Length=134248 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| | || | ||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 107755 CTCCCCAACAGGGAATCGAACCCTGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 107696 Query 57067 TACTACCGAGGA 57078 ||||| ||||| Sbjct 107695 TACTATTGAGGA 107684 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| | || | ||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 107913 CTCCCCAACAGGGAATCGAACCCTGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 107854 Query 57067 TACTACCGAGGA 57078 ||||| ||||| Sbjct 107853 TACTATTGAGGA 107842 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| | || | ||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 108596 CTCCCCAACAGGGAATCGAACCCTGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 108537 Query 57067 TACTACCGAGGA 57078 ||||| ||||| Sbjct 108536 TACTATTGAGGA 108525 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| | || | ||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 108756 CTCCCCAACAGGGAATCGAACCCTGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 108697 Query 57067 TACTACCGAGGA 57078 ||||| ||||| Sbjct 108696 TACTATTGAGGA 108685 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| | || | ||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 108916 CTCCCCAACAGGGAATCGAACCCTGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 108857 Query 57067 TACTACCGAGGA 57078 ||||| ||||| Sbjct 108856 TACTATTGAGGA 108845 >seq14633 Length=899 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| | || | ||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 201 CTCCCCAACAGGGAATCGAACCCTGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 142 Query 57067 TACTACCGAGGAT 57079 ||||| || ||| Sbjct 141 TACTATTGAAGAT 129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543063559073360