Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pleurobrachia_20bachei_20[genbank_20GCA_5F000695325.1_202014-05-21] 21,979 sequences; 156,121,975 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq13598 120 3e-22 seq17776 93.3 4e-14 seq17654 93.3 4e-14 seq15593 93.3 4e-14 seq11240 87.8 2e-12 seq2440 84.2 2e-11 seq18 82.4 8e-11 >seq13598 Length=1024 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || |||||||||||||||||| |||| || ||| ||| Sbjct 243 ATGCAGATTTTCGTGAAGACCCTTACGGGCAAAACCATCACCCTCGAGGTTGAGCCCAGT 184 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 ||| | | | | | || | || |||| |||||||||||||| ||| | |||||| Sbjct 183 GACTCCATCGAGAATGTCAAGGCCAAGATCCAGGACAAAGAGGGAATCCCCCCTGACCAA 124 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | ||| || || ||||| || || | | ||||| | ||||||||| Sbjct 123 CAGAGGTTGATCTTCGCTGGAAAGCAGCTCGAGGATGGAAGGACCCTGAGTGACTACAAC 64 Query 38424 ATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| ||| || || || | || || ||| | |||| || Sbjct 63 ATCCAGAAGGAGAGC-ACCCTTCACCTTGTCCTCCGTCTCCGAGGGGG 17 >seq17776 Length=453 Score = 93.3 bits (102), Expect = 4e-14 Identities = 109/145 (75%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || ||||| || || ||||||||| | || || ||| ||| Sbjct 228 AATGCAGATCTTCGTGAAGACTCTCACCGGAAAGACCATCACCCTTGAGGTTGAGCCCAG 169 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | |||| | || | || |||| |||||||||||||| ||| | |||| Sbjct 168 CGACTCCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAAGAGGGAATCCCCCCTGACC 110 Query 38362 AACAGCGGCTCATTTACGCGGGCAA 38386 ||||| ||||||| | ||| || || Sbjct 109 AACAGAGGCTCATCTTCGCTGGTAA 85 >seq17654 Length=470 Score = 93.3 bits (102), Expect = 4e-14 Identities = 109/145 (75%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || ||||| || || ||||||||| | || || ||| ||| Sbjct 239 AATGCAGATCTTCGTGAAGACTCTCACCGGAAAGACCATCACCCTTGAGGTTGAGCCCAG 180 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | |||| | || | || |||| |||||||||||||| ||| | |||| Sbjct 179 CGACTCCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAAGAGGGAATCCCCCCTGACC 121 Query 38362 AACAGCGGCTCATTTACGCGGGCAA 38386 ||||| ||||||| | ||| || || Sbjct 120 AACAGAGGCTCATCTTCGCTGGTAA 96 >seq15593 Length=744 Score = 93.3 bits (102), Expect = 4e-14 Identities = 109/145 (75%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || ||||| || || ||||||||| | || || ||| ||| Sbjct 214 AATGCAGATCTTCGTGAAGACTCTCACCGGAAAGACCATCACCCTTGAGGTTGAGCCCAG 155 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | |||| | || | || |||| |||||||||||||| ||| | |||| Sbjct 154 CGACTCCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAAGAGGGAATCCCCCCTGACC 96 Query 38362 AACAGCGGCTCATTTACGCGGGCAA 38386 ||||| ||||||| | ||| || || Sbjct 95 AACAGAGGCTCATCTTCGCTGGTAA 71 Score = 93.3 bits (102), Expect = 4e-14 Identities = 109/145 (75%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || ||||| || || ||||||||| | || || ||| ||| Sbjct 547 AATGCAGATCTTCGTGAAGACTCTCACCGGAAAGACCATCACCCTTGAGGTTGAGCCCAG 488 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | |||| | || | || |||| |||||||||||||| ||| | |||| Sbjct 487 CGACTCCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAAGAGGGAATCCCCCCTGACC 429 Query 38362 AACAGCGGCTCATTTACGCGGGCAA 38386 ||||| ||||||| | ||| || || Sbjct 428 AACAGAGGCTCATCTTCGCTGGTAA 404 >seq11240 Length=1475 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || ||||| || || ||||||||| | || || ||| ||| Sbjct 186 AATGCAGATCTTCGTGAAGACCCTCACCGGAAAGACCATCACCCTTGAGGTTGAGCCCAG 245 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | |||| | || | || |||| |||||||||||||| ||| | |||| Sbjct 246 CGACTCCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAAGAGGGAATCCCCCCTGACC 304 Query 38362 AACAGCGGCTCATTTACGCGGGCAA 38386 ||||| || |||| | ||| || || Sbjct 305 AACAGAGGTTCATCTTCGCTGGTAA 329 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || ||||| || || ||||||||| | || || ||| ||| Sbjct 521 AATGCAGATCTTCGTGAAGACCCTCACCGGAAAGACCATCACCCTTGAGGTTGAGCCCAG 580 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | |||| | || | || |||| |||||||||||||| ||| | |||| Sbjct 581 CGACTCCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAAGAGGGAATCCCCCCTGACC 639 Query 38362 AACAGCGGCTCATTTACGCGGGCAA 38386 ||||| || |||| | ||| || || Sbjct 640 AACAGAGGTTCATCTTCGCTGGTAA 664 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || ||||| || || ||||||||| | || || ||| ||| Sbjct 857 AATGCAGATCTTCGTGAAGACCCTCACCGGAAAGACCATCACCCTTGAGGTTGAGCCCAG 916 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | |||| | || | || |||| |||||||||||||| ||| | |||| Sbjct 917 CGACTCCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAAGAGGGAATCCCCCCTGACC 975 Query 38362 AACAGCGGCTCATTTACGCGGGCAA 38386 ||||| || |||| | ||| || || Sbjct 976 AACAGAGGTTCATCTTCGCTGGTAA 1000 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || ||||| || || ||||||||| | || || ||| ||| Sbjct 1192 AATGCAGATCTTCGTGAAGACCCTCACCGGAAAGACCATCACCCTTGAGGTTGAGCCCAG 1251 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | |||| | || | || |||| |||||||||||||| ||| | |||| Sbjct 1252 CGACTCCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAAGAGGGAATCCCCCCTGACC 1310 Query 38362 AACAGCGGCTCATTTACGCGGGCAA 38386 ||||| || |||| | ||| || || Sbjct 1311 AACAGAGGTTCATCTTCGCTGGTAA 1335 >seq2440 Length=13695 Score = 84.2 bits (92), Expect = 2e-11 Identities = 92/120 (77%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||||||||||||||||||| |||| || ||| ||| Sbjct 119 ATGCAGATTTTCGTGAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTTGAGCCCAGT 60 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | | |||| | || | || |||| |||||||||||||| ||| | ||||| Sbjct 59 GACTCCATCGAGAACG-TCAAGGCTAAGATCCAGGACAAAGAGGGAATCCCCCCTGACCA 1 >seq18 Length=176966 Score = 82.4 bits (90), Expect = 8e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || |||||||| || || |||||| |||| || ||| | | Sbjct 84810 ATGCAAATCTTTGTCAAGACCCTCACGGGTAAGACAATCACCCTCGAGGTTGAGCCTAGT 84869 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 ||| | | | | |||| | ||||||| ||||| |||||||||||| | |||||| Sbjct 84870 GACTCCATCGAGAATGTTAAGGCCAAAATCCAGGACAAGGAGGGAATTCCCCCTGACCAA 84929 Query 38364 CAGCGGCTCATTTACGCGGG 38383 ||| || | || | ||| || Sbjct 84930 CAGAGGTTGATCTTCGCCGG 84949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500035383775360