Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pleurobrachia_20bachei_20[genbank_20GCA_5F000695325.1_202014-05-21] 21,979 sequences; 156,121,975 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1866 122 3e-22 seq930 120 1e-21 seq44 120 1e-21 seq384 105 3e-17 >seq1866 Length=17415 Score = 122 bits (134), Expect = 3e-22 Identities = 182/258 (71%), Gaps = 8/258 (3%) Strand=Plus/Plus Query 451331 ACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATT 451390 || || ||||| || ||||| ||||| || |||| || ||||| ||||| |||| |||| Sbjct 13520 ACCGTCCCCGCCTACTTCAACGATGCCCAGAGGCAGGCCACTAAGGATGCCGGACTTATT 13579 Query 451391 GCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGA 451450 |||||| | |||||| | | || || ||||||||||| || |||||| | || ||||| Sbjct 13580 GCTGGTCTGAATGTTATGAGGATCATCAATGAACCTACTGCTGCTGCTATCGCTTATGG- 13638 Query 451451 CTAGGAAAATCAAAAGAAACA-GAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGG 451509 || | | ||||| | | ||| || |||||| | || || ||| ||||||| || Sbjct 13639 ------AATTGACAAGAAGGAGGGAGAGAAGAATATTCTGGTGTTCGATCTTGGTGGTGG 13692 Query 451510 AACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAA 451569 ||| |||| ||| | | | ||||| |||| || || || || || || || Sbjct 13693 TACTTTTGATGTGTCTCTGTTGACCATTGATAATGGAGTGTTCGAGGTTGTCGCTACTAA 13752 Query 451570 TGGTGATACTCATCTAGG 451587 || || |||||||| || Sbjct 13753 CGGAGACACTCATCTTGG 13770 Score = 91.5 bits (100), Expect = 6e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 451331 ACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATT 451390 || || ||||| || ||||| || || || |||| || ||||| ||||| |||| |||| Sbjct 17252 ACCGTCCCCGCCTACTTCAACGACGCCCAGAGGCAGGCTACTAAGGATGCCGGACTTATT 17311 Query 451391 GCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGA 451450 ||||| | |||||| | | ||||||||||| || || || |||||| | || |||||| Sbjct 17312 GCTGGCCTGAATGTTATGAGGATTATTAATGAGCCCACTGCCGCTGCTATCGCCTATGGA 17371 Score = 87.8 bits (96), Expect = 7e-12 Identities = 104/139 (75%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 451892 ATTGATGAAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTTG 451951 |||||||||||||||||||| ||||| ||||| | ||||| || ||||| | ||| Sbjct 14272 ATTGATGAAATTGTGCTTGTTGGAGGATCTACCAGGATTCCCAAGATTCA--GCAACTTG 14329 Query 451952 TC--TTCTTATTTTGGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTG 452009 || ||||||| ||||| ||| | | ||| | | ||||||||||| ||||||| Sbjct 14330 TCAAGGAGTATTTTGATGGAAAGGAACCAAGCAAGGGAATTAATCCTGATGAGGCTGTTG 14389 Query 452010 CATATGGTGCTGCAGTTCA 452028 | ||||| ||||| || || Sbjct 14390 CTTATGGAGCTGCTGTACA 14408 >seq930 Length=32570 Score = 120 bits (132), Expect = 1e-21 Identities = 234/343 (68%), Gaps = 7/343 (2%) Strand=Plus/Minus Query 451223 GGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAA 451282 ||||| | ||| |||| ||||| || || |||||| | || || |||||||| Sbjct 426 GGTGAGAAGAAAGCTTTCTTCCCTGAGGAGATCAGCTCTATGATCCTGACCAAAATGAAG 367 Query 451283 GAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCT 451342 ||||||||||| ||| | || || | |||||||| || | || || || ||| Sbjct 366 GAAACAGCAGAGGCATACCTCGGAAACTCAATCACTGATGCTGTTGTAACAGTCCCTGCT 307 Query 451343 TATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAAT 451402 || ||||| || | || || || || || ||||| || ||| |||||||| | || Sbjct 306 TACTTCAACGACTCTCAGCGACAGGCCACCAAAGACGCCGGAGTGATTGCTGGACTTAAC 247 Query 451403 GTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCA 451462 || || | || |||||||| ||||| || |||||| | ||||| || || ||| || | Sbjct 246 GTGCTGAGGATCATTAATGAGCCTACTGCCGCTGCTATCGCATACGGTCT-GGACAA-GA 189 Query 451463 AAAGAAACA-----GAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATG 451517 | |||||| | ||| || ||| | || | || ||| | ||||| || ||| | Sbjct 188 AGGGAAACACAGCTGGAGAGAAGAATGTGTTGATCTTCGATCTCGGTGGTGGTACTTTCG 129 Query 451518 ATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAA 451560 || |||| | | || ||||| ||||| | ||||| ||||| Sbjct 128 ATGTTTCTATCTTGTCTATTGAGGATGGAATCTTTGAGGTAAA 86 >seq44 Length=142889 Score = 120 bits (132), Expect = 1e-21 Identities = 234/343 (68%), Gaps = 7/343 (2%) Strand=Plus/Plus Query 451223 GGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAA 451282 ||||| | ||| |||| ||||| || || |||||| | || || |||||||| Sbjct 49997 GGTGAGAAGAAAGCTTTCTTCCCTGAGGAGATCAGCTCTATGATCCTGACCAAAATGAAG 50056 Query 451283 GAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCT 451342 ||||||||||| ||| | || || | |||||||| || | || || || ||| Sbjct 50057 GAAACAGCAGAGGCATACCTCGGAAACTCAATCACTGATGCTGTTGTAACAGTCCCTGCT 50116 Query 451343 TATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAAT 451402 || ||||| || | || || || || || ||||| || ||| |||||||| | || Sbjct 50117 TACTTCAACGACTCTCAGCGACAGGCCACCAAAGACGCCGGAGTGATTGCTGGACTTAAC 50176 Query 451403 GTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCA 451462 || || | || |||||||| ||||| || |||||| | ||||| || || ||| || | Sbjct 50177 GTGCTGAGGATCATTAATGAGCCTACTGCCGCTGCTATCGCATACGGTCT-GGACAA-GA 50234 Query 451463 AAAGAAACA-----GAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATG 451517 | |||||| | ||| || ||| | || | || ||| | ||||| || ||| | Sbjct 50235 AGGGAAACACAGCTGGAGAGAAGAATGTGTTGATCTTCGATCTCGGTGGTGGTACTTTCG 50294 Query 451518 ATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAA 451560 || |||| | | || ||||| ||||| | ||||| ||||| Sbjct 50295 ATGTTTCTATCTTGTCTATTGAGGATGGAATCTTTGAGGTAAA 50337 >seq384 Length=55996 Score = 105 bits (116), Expect = 3e-17 Identities = 129/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 451277 ATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTT 451336 ||||||||||| |||||| ||| |||||||| ||| ||||| || ||| | || || Sbjct 46302 ATGAAAGAAACTGCAGAAGCTTATCTTGGTTCTAAAGTCACTGAGGCTGTAGTAACAGTC 46361 Query 451337 CCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGT 451396 || || || || ||||| || || || || ||||||||||| ||| ||||||||| Sbjct 46362 CCTGCCTACTTTAATGACGCCCAGAGGGCCGCCACTAAAGATGCGGGAACTATTGCTGGA 46421 Query 451397 TTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACT 451452 | | | ||||||| ||||| ||||| ||||||||| | || ||||| || Sbjct 46422 CTTACCATCAGGAGAATTATCAATGAGCCTACTGCAGCTGCTATTGCTTATGGTCT 46477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975162025967732