Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pleurobrachia_20bachei_20[genbank_20GCA_5F000695325.1_202014-05-21] 21,979 sequences; 156,121,975 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1866 143 2e-28 seq1696 132 4e-25 seq5648 131 1e-24 seq930 131 1e-24 seq44 131 1e-24 seq384 127 2e-23 >seq1866 Length=17415 Score = 143 bits (158), Expect = 2e-28 Identities = 185/255 (73%), Gaps = 3/255 (1%) Strand=Plus/Minus Query 518077 GAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAA 518136 ||| | ||||| |||| | ||| |||| |||||| || |||||||| | ||| || Sbjct 13735 GAACACTCCATTATCAATGGTCAACAGAGACACATCAAAAGTACCACCACCAAGATCGAA 13676 Query 518137 AATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGC 518196 | || | |||| | ||| || | | || |||| ||||| || | ||||||||| Sbjct 13675 CACCAGAATATTCTTCTCTCCCTCCT---TCTTGTCAATTCCATAAGCGATAGCAGCAGC 13619 Query 518197 AGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGT 518256 ||| |||||||| || || |||| |||||| ||||||||||| ||| ||||| ||||| Sbjct 13618 AGTAGGTTCATTGATGATCCTCATAACATTCAGACCAGCAATAAGTCCGGCATCCTTAGT 13559 Query 518257 GGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTC 518316 ||| || || || | |||||| || || || || || || | |||||| | | ||||| Sbjct 13558 GGCCTGCCTCTGGGCATCGTTGAAGTAGGCGGGGACGGTGACAACGGCGTTCTTAACTTC 13499 Query 518317 TTTACCAATATAAGC 518331 || || |||||||| Sbjct 13498 CTTTCCGATATAAGC 13484 Score = 113 bits (124), Expect = 3e-19 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || |||| ||||| || | |||||| ||||| || ||||||||||| |||| |||| Sbjct 17382 TTCTTGTCAATTCCATAGGCGATAGCAGCGGCAGTGGGCTCATTAATAATCCTCATAACA 17323 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || |||||||| ||| ||||| ||||| || || || || | ||||| || || Sbjct 17322 TTCAGGCCAGCAATAAGTCCGGCATCCTTAGTAGCCTGCCTCTGGGCGTCGTTGAAGTAG 17263 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGT 518344 || || || || | |||||| | | ||||| || ||||| ||||| || |||| Sbjct 17262 GCGGGGACGGTGACAACGGCGTTCTTAACTTCCTTTCCAATGTAAGCCTCGGCAGTTTCC 17203 Query 518345 TTCAT 518349 ||||| Sbjct 17202 TTCAT 17198 >seq1696 Length=19484 Score = 132 bits (146), Expect = 4e-25 Identities = 456/709 (64%), Gaps = 19/709 (3%) Strand=Plus/Minus Query 518015 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 518074 || || || |||||||| || || || || | | || ||||| || |||| || || Sbjct 2399 ACCAGCCGGTTATCAAAGTCCTCTCCGCCAAGATGGGTGTTTCCAGATGTAGACCTCACC 2340 Query 518075 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCA 518134 | || | ||||| |||| |||| | | |||||| || || ||||| | |||| Sbjct 2339 TCAAACACACCATCATCAATGGACAGGATTGAAACATCAAATGTACCCCCACCAAGATCA 2280 Query 518135 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTA---------TCAAGACCATACGCA 518185 || || || |||||| | || | ||| | | || | || || ||| Sbjct 2279 AATATCAGCACATTCTTCTCCACGACTTCCCCCTCAGCCCGGCGATCTAACCCGTAGGCA 2220 Query 518186 AAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCT 518245 | || || || || || || || |||||||||| |||||| || || ||||| ||| Sbjct 2219 ATGGCTGCTGCGGTGGGCTCGTTGATAATTCTCAGAACATTGAGCCCTGCAATCACCCCT 2160 Query 518246 GCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCA 518305 ||||| || || || || || ||||| || || || ||||| |||||||| | ||||||| Sbjct 2159 GCATCCTTCGTTGCCTGCCTCTGTGAGTCATTGAAGTATGCCGGAACAGTCACAACGGCA 2100 Query 518306 TCAGTTACTTCTTT-ACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCAT 518364 || | || || ||| | || || || |||| ||||| |||| | | ||| Sbjct 2099 TCT-TCACACGTTCCACCCAGGTACGCCTCGGCAGTTTCCTTCATCTTACCCAGGACCAT 2041 Query 518365 TGATGAAATTTGTTCTGGGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATA 518424 | || || | || || | | || | || | | || | || || | | Sbjct 2040 GGCGGATATCTCCTCCGGATAGAACAGCCTCCGTTTACCCTTGTACGCCACCTCTATCTT 1981 Query 518425 TGGTTTATTACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACT 518484 ||||| | |||| || || ||||| ||||||| | | |||| |||| || Sbjct 1980 CGGTTTGTCGTTTTCATTGATGACATTAAAGGGCCAGTGCATAAGATCTTCCTGAATACA 1921 Query 518485 TTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATT 518544 || |||| | | | || ||||| || | || |||||||| | || || || || Sbjct 1920 TTCGTCAGTGTAGCCCCTGCCAATCAACCTCTTGGCATCAAACACGGTGTTCTGGGGGTT 1861 Query 518545 AATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTC----TCTGTAAATG 518600 ||| | || | ||| || |||||||||| ||| |||||| || || |||| Sbjct 1860 GTACGCACCCTGCTGTTTCGCCGCATCTCCAACCAG----TCTGTCAATGTCCGTGAATG 1805 Query 518601 AAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCAT 518660 || || || || || |||| || || || ||||||||||| ||||| |||| Sbjct 1804 CCACGTAACTGGGCGTGGTCCGATGGCCCATGTCGTTAGCAATAATTTCCACTTTTCCAT 1745 Query 518661 TTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAAT 518709 | || | || || |||||||| | ||||| || |||||||| ||||| Sbjct 1744 TCTGGTAGACCCCCACACAACTGTATGTTGTACCCAAATCAATCCCAAT 1696 >seq5648 Length=5288 Score = 131 bits (144), Expect = 1e-24 Identities = 177/247 (72%), Gaps = 6/247 (2%) Strand=Plus/Plus Query 518070 TTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCA 518129 |||| | || | |||||| |||| |||||| | || ||||| || |||||||| | Sbjct 3743 TTACCTCAAAGATTCCATCCTCAATAGACAAGATAGAAACATCGAAAGTACCACCACCGA 3802 Query 518130 TATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT------TTATCAAGACCATACG 518183 ||| || || | |||||| | ||| || |||| || || ||||| || | Sbjct 3803 GATCGAAGATCAACACATTCTTCTCTCCAGCTGTGTTTCCCTTCTTGTCCAGACCGTATG 3862 Query 518184 CAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTC 518243 | | |||||| ||||| || |||||||| || |||| || ||||| |||||||| || Sbjct 3863 CGATAGCAGCGGCAGTAGGCTCATTAATGATCCTCAGCACGTTAAGTCCAGCAATCACTC 3922 Query 518244 CTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGG 518303 | ||||| || |||||||||| || || || || || || ||||| || || | ||||| Sbjct 3923 CAGCATCCTTGGTGGCTTGTCGCTGAGAGTCATTGAAGTAAGCAGGGACTGTTACAACGG 3982 Query 518304 CATCAGT 518310 ||||||| Sbjct 3983 CATCAGT 3989 >seq930 Length=32570 Score = 131 bits (144), Expect = 1e-24 Identities = 177/247 (72%), Gaps = 6/247 (2%) Strand=Plus/Plus Query 518070 TTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCA 518129 |||| | || | |||||| |||| |||||| | || ||||| || |||||||| | Sbjct 3901 TTACCTCAAAGATTCCATCCTCAATAGACAAGATAGAAACATCGAAAGTACCACCACCGA 3960 Query 518130 TATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT------TTATCAAGACCATACG 518183 ||| || || | |||||| | ||| || |||| || || ||||| || | Sbjct 3961 GATCGAAGATCAACACATTCTTCTCTCCAGCTGTGTTTCCCTTCTTGTCCAGACCGTATG 4020 Query 518184 CAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTC 518243 | | |||||| ||||| || |||||||| || |||| || ||||| |||||||| || Sbjct 4021 CGATAGCAGCGGCAGTAGGCTCATTAATGATCCTCAGCACGTTAAGTCCAGCAATCACTC 4080 Query 518244 CTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGG 518303 | ||||| || |||||||||| || || || || || || ||||| || || | ||||| Sbjct 4081 CAGCATCCTTGGTGGCTTGTCGCTGAGAGTCATTGAAGTAAGCAGGGACTGTTACAACGG 4140 Query 518304 CATCAGT 518310 ||||||| Sbjct 4141 CATCAGT 4147 >seq44 Length=142889 Score = 131 bits (144), Expect = 1e-24 Identities = 177/247 (72%), Gaps = 6/247 (2%) Strand=Plus/Minus Query 518070 TTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCA 518129 |||| | || | |||||| |||| |||||| | || ||||| || |||||||| | Sbjct 48970 TTACCTCAAAGATTCCATCCTCAATAGACAAGATAGAAACATCGAAAGTACCACCACCGA 48911 Query 518130 TATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT------TTATCAAGACCATACG 518183 ||| || || | |||||| | ||| || |||| || || ||||| || | Sbjct 48910 GATCGAAGATCAACACATTCTTCTCTCCAGCTGTGTTTCCCTTCTTGTCCAGACCGTATG 48851 Query 518184 CAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTC 518243 | | |||||| ||||| || |||||||| || |||| || ||||| |||||||| || Sbjct 48850 CGATAGCAGCGGCAGTAGGCTCATTAATGATCCTCAGCACGTTAAGTCCAGCAATCACTC 48791 Query 518244 CTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGG 518303 | ||||| || |||||||||| || || || || || || ||||| || || | ||||| Sbjct 48790 CAGCATCCTTGGTGGCTTGTCGCTGAGAGTCATTGAAGTAAGCAGGGACTGTTACAACGG 48731 Query 518304 CATCAGT 518310 ||||||| Sbjct 48730 CATCAGT 48724 >seq384 Length=55996 Score = 127 bits (140), Expect = 2e-23 Identities = 139/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || |||||||||||||| |||| |||||| ||||| || ||||| ||||||||| | Sbjct 46486 TTCTTATCAAGACCATAAGCAATAGCAGCTGCAGTAGGCTCATTGATAATTCTCCTGATG 46427 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 |||| |||||||| |||| |||||||||||||| || || | || ||||| || Sbjct 46426 GTAAGTCCAGCAATAGTTCCCGCATCTTTAGTGGCGGCCCTCTGGGCGTCATTAAAGTAG 46367 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGT 518344 ||||| || || | || || ||||| |||| ||||| |||||| ||| |||| | Sbjct 46366 GCAGGGACTGTTACTACAGCCTCAGTGACTTTAGAACCAAGATAAGCTTCTGCAGTTTCT 46307 Query 518345 TTCAT 518349 ||||| Sbjct 46306 TTCAT 46302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779731729621174