Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pleurobrachia_20bachei_20[genbank_20GCA_5F000695325.1_202014-05-21] 21,979 sequences; 156,121,975 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq930 143 3e-29 seq44 143 3e-29 seq5648 140 4e-28 seq1866 120 4e-22 seq384 109 7e-19 seq16405 89.7 7e-13 >seq930 Length=32570 Score = 143 bits (158), Expect = 3e-29 Identities = 223/319 (70%), Gaps = 6/319 (2%) Strand=Plus/Plus Query 7499 TTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCC 7558 || || |||||||| || | ||||| || | |||||||| || ||||||||||| Sbjct 86 TTTACCTCAAAGATTCCATCCTCAATAGACAAGATAGAAACATCGAAAGTACCACCACCG 145 Query 7559 AGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTT------CTTATCGAGACCGTAC 7612 || || || || | || ||| | || | || |||| ||| || |||||||| Sbjct 146 AGATCGAAGATCAACACATTCTTCTCTCCAGCTGTGTTTCCCTTCTTGTCCAGACCGTAT 205 Query 7613 GCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTT 7672 |||||||| || || || || |||||||| || | || ||| || |||||||| | Sbjct 206 GCGATAGCAGCGGCAGTAGGCTCATTAATGATCCTCAGCACGTTAAGTCCAGCAATCACT 265 Query 7673 GCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACC 7732 | || ||||| || || ||||| || || ||||| ||||| || ||||| ||||| || Sbjct 266 CCGGCGTCTTTGGTGGCCTGTCGCTGAGAGTCGTTGAAGTAAGCAGGGACTGTTACAACA 325 Query 7733 GCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACC 7792 || || |||| | || ||||| || | || || | || ||||||||||| || | | Sbjct 326 GCATCAGTGATTGAGTTTCCGAGGTATGCCTCTGCTGTTTCCTTCATTTTGGTCAGGATC 385 Query 7793 ATCGATGAAATCTCTTCAG 7811 || || ||||| |||| Sbjct 386 ATAGAGCTGATCTCCTCAG 404 Score = 140 bits (154), Expect = 4e-28 Identities = 222/319 (70%), Gaps = 6/319 (2%) Strand=Plus/Plus Query 7499 TTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCC 7558 || || |||||||| || | ||||| || | |||||||| || ||||||||||| Sbjct 3900 TTTACCTCAAAGATTCCATCCTCAATAGACAAGATAGAAACATCGAAAGTACCACCACCG 3959 Query 7559 AGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTT------CTTATCGAGACCGTAC 7612 || || || || | || ||| | || | || |||| ||| || |||||||| Sbjct 3960 AGATCGAAGATCAACACATTCTTCTCTCCAGCTGTGTTTCCCTTCTTGTCCAGACCGTAT 4019 Query 7613 GCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTT 7672 |||||||| || || || || |||||||| || | || ||| || |||||||| | Sbjct 4020 GCGATAGCAGCGGCAGTAGGCTCATTAATGATCCTCAGCACGTTAAGTCCAGCAATCACT 4079 Query 7673 GCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACC 7732 | ||||| || || |||||||| || || || || ||||| || ||||| ||||| || Sbjct 4080 CCAGCATCCTTGGTGGCTTGTCGCTGAGAGTCATTGAAGTAAGCAGGGACTGTTACAACG 4139 Query 7733 GCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACC 7792 || || |||| || ||||| || | || || | || ||||||||||| || | | Sbjct 4140 GCATCAGTGATGGAGTTTCCGAGGTATGCCTCAGCTGTTTCCTTCATTTTGGTCAGGATC 4199 Query 7793 ATCGATGAAATCTCTTCAG 7811 || || ||||| |||| Sbjct 4200 ATAGAGCTGATCTCCTCAG 4218 >seq44 Length=142889 Score = 143 bits (158), Expect = 3e-29 Identities = 223/319 (70%), Gaps = 6/319 (2%) Strand=Plus/Minus Query 7499 TTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCC 7558 || || |||||||| || | ||||| || | |||||||| || ||||||||||| Sbjct 50337 TTTACCTCAAAGATTCCATCCTCAATAGACAAGATAGAAACATCGAAAGTACCACCACCG 50278 Query 7559 AGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTT------CTTATCGAGACCGTAC 7612 || || || || | || ||| | || | || |||| ||| || |||||||| Sbjct 50277 AGATCGAAGATCAACACATTCTTCTCTCCAGCTGTGTTTCCCTTCTTGTCCAGACCGTAT 50218 Query 7613 GCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTT 7672 |||||||| || || || || |||||||| || | || ||| || |||||||| | Sbjct 50217 GCGATAGCAGCGGCAGTAGGCTCATTAATGATCCTCAGCACGTTAAGTCCAGCAATCACT 50158 Query 7673 GCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACC 7732 | || ||||| || || ||||| || || ||||| ||||| || ||||| ||||| || Sbjct 50157 CCGGCGTCTTTGGTGGCCTGTCGCTGAGAGTCGTTGAAGTAAGCAGGGACTGTTACAACA 50098 Query 7733 GCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACC 7792 || || |||| | || ||||| || | || || | || ||||||||||| || | | Sbjct 50097 GCATCAGTGATTGAGTTTCCGAGGTATGCCTCTGCTGTTTCCTTCATTTTGGTCAGGATC 50038 Query 7793 ATCGATGAAATCTCTTCAG 7811 || || ||||| |||| Sbjct 50037 ATAGAGCTGATCTCCTCAG 50019 Score = 140 bits (154), Expect = 4e-28 Identities = 222/319 (70%), Gaps = 6/319 (2%) Strand=Plus/Minus Query 7499 TTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCC 7558 || || |||||||| || | ||||| || | |||||||| || ||||||||||| Sbjct 48971 TTTACCTCAAAGATTCCATCCTCAATAGACAAGATAGAAACATCGAAAGTACCACCACCG 48912 Query 7559 AGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTT------CTTATCGAGACCGTAC 7612 || || || || | || ||| | || | || |||| ||| || |||||||| Sbjct 48911 AGATCGAAGATCAACACATTCTTCTCTCCAGCTGTGTTTCCCTTCTTGTCCAGACCGTAT 48852 Query 7613 GCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTT 7672 |||||||| || || || || |||||||| || | || ||| || |||||||| | Sbjct 48851 GCGATAGCAGCGGCAGTAGGCTCATTAATGATCCTCAGCACGTTAAGTCCAGCAATCACT 48792 Query 7673 GCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACC 7732 | ||||| || || |||||||| || || || || ||||| || ||||| ||||| || Sbjct 48791 CCAGCATCCTTGGTGGCTTGTCGCTGAGAGTCATTGAAGTAAGCAGGGACTGTTACAACG 48732 Query 7733 GCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACC 7792 || || |||| || ||||| || | || || | || ||||||||||| || | | Sbjct 48731 GCATCAGTGATGGAGTTTCCGAGGTATGCCTCAGCTGTTTCCTTCATTTTGGTCAGGATC 48672 Query 7793 ATCGATGAAATCTCTTCAG 7811 || || ||||| |||| Sbjct 48671 ATAGAGCTGATCTCCTCAG 48653 >seq5648 Length=5288 Score = 140 bits (154), Expect = 4e-28 Identities = 222/319 (70%), Gaps = 6/319 (2%) Strand=Plus/Plus Query 7499 TTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCC 7558 || || |||||||| || | ||||| || | |||||||| || ||||||||||| Sbjct 3742 TTTACCTCAAAGATTCCATCCTCAATAGACAAGATAGAAACATCGAAAGTACCACCACCG 3801 Query 7559 AGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTT------CTTATCGAGACCGTAC 7612 || || || || | || ||| | || | || |||| ||| || |||||||| Sbjct 3802 AGATCGAAGATCAACACATTCTTCTCTCCAGCTGTGTTTCCCTTCTTGTCCAGACCGTAT 3861 Query 7613 GCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTT 7672 |||||||| || || || || |||||||| || | || ||| || |||||||| | Sbjct 3862 GCGATAGCAGCGGCAGTAGGCTCATTAATGATCCTCAGCACGTTAAGTCCAGCAATCACT 3921 Query 7673 GCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACC 7732 | ||||| || || |||||||| || || || || ||||| || ||||| ||||| || Sbjct 3922 CCAGCATCCTTGGTGGCTTGTCGCTGAGAGTCATTGAAGTAAGCAGGGACTGTTACAACG 3981 Query 7733 GCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACC 7792 || || |||| || ||||| || | || || | || ||||||||||| || | | Sbjct 3982 GCATCAGTGATGGAGTTTCCGAGGTATGCCTCAGCTGTTTCCTTCATTTTGGTCAGGATC 4041 Query 7793 ATCGATGAAATCTCTTCAG 7811 || || ||||| |||| Sbjct 4042 ATAGAGCTGATCTCCTCAG 4060 >seq1866 Length=17415 Score = 120 bits (132), Expect = 4e-22 Identities = 184/260 (71%), Gaps = 3/260 (1%) Strand=Plus/Minus Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTC 7579 |||||| | |||| || |||||||| ||||||||||| || || || | || | ||| Sbjct 13722 TCAATGGTCAACAGAGACACATCAAAAGTACCACCACCAAGATCGAACACCAGAATATTC 13663 Query 7580 GTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTA 7639 | || || | | ||||| || | || || |||||||| || || || |||||||| Sbjct 13662 TTCTC-TC--CCTCCTTCTTGTCAATTCCATAAGCGATAGCAGCAGCAGTAGGTTCATTG 13606 Query 7640 ATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGC 7699 || || | | | ||||| ||||||||| | | ||||| || || || || | || Sbjct 13605 ATGATCCTCATAACATTCAGACCAGCAATAAGTCCGGCATCCTTAGTGGCCTGCCTCTGG 13546 Query 7700 GAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATAC 7759 | |||||| |||||||| ||||| || || || |||| | | |||| ||| |||| ||| Sbjct 13545 GCATCGTTGAAGTAGGCGGGGACGGTGACAACGGCGTTCTTAACTTCCTTTCCGATATAA 13486 Query 7760 GATTCCGCGATATCTTTCAT 7779 | || || | || ||||| Sbjct 13485 GCCTCGGCTGTCTCCTTCAT 13466 Score = 91.5 bits (100), Expect = 2e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 ||||| || | || || |||||||| || || || || ||||||||||| | | | Sbjct 17382 TTCTTGTCAATTCCATAGGCGATAGCAGCGGCAGTGGGCTCATTAATAATCCTCATAACA 17323 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 ||||||||||||||| | | ||||| || || || || | || | ||||| |||||| Sbjct 17322 TTCAGGCCAGCAATAAGTCCGGCATCCTTAGTAGCCTGCCTCTGGGCGTCGTTGAAGTAG 17263 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752 || ||||| || || || |||| | | |||| ||| || Sbjct 17262 GCGGGGACGGTGACAACGGCGTTCTTAACTTCCTTTCC 17225 >seq384 Length=55996 Score = 109 bits (120), Expect = 7e-19 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 |||||||| ||||| || || ||||| || || || || ||||| ||||| | | Sbjct 46486 TTCTTATCAAGACCATAAGCAATAGCAGCTGCAGTAGGCTCATTGATAATTCTCCTGATG 46427 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 | || |||||||||||| |||||||||| || || | || | || ||||||||| Sbjct 46426 GTAAGTCCAGCAATAGTTCCCGCATCTTTAGTGGCGGCCCTCTGGGCGTCATTAAAGTAG 46367 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 || ||||| ||||| || || || |||||||| ||| ||||| | ||| || | ||| Sbjct 46366 GCAGGGACTGTTACTACAGCCTCAGTGACTTTAGAACCAAGATAAGCTTCTGCAGTTTCT 46307 Query 7775 TTCAT 7779 ||||| Sbjct 46306 TTCAT 46302 >seq16405 Length=639 Score = 89.7 bits (98), Expect = 7e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 7658 AGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCC 7717 || |||||||||||| |||||||||| || || | || | |||||||| ||||| Sbjct 10 AGTCCAGCAATAGTTCCCGCATCTTTAGTGGCGGCCCTCTGAGCGTCGTTAAAATAGGCA 69 Query 7718 GGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTC 7777 ||||| || ||||| || || |||||||| ||| ||||| | |||||| | |||||| Sbjct 70 GGGACTGTAACGACAGCTTCAGTGACTTTAGAACCAAGATATGCTTCCGCAGTCTCTTTC 129 Query 7778 AT 7779 || Sbjct 130 AT 131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634958305202360