Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pleurobrachia_20bachei_20[genbank_20GCA_5F000695325.1_202014-05-21] 21,979 sequences; 156,121,975 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq13598 104 5e-17 seq17776 95.1 3e-14 seq17654 95.1 3e-14 seq15593 95.1 3e-14 seq11240 86.0 1e-11 >seq13598 Length=1024 Score = 104 bits (114), Expect = 5e-17 Identities = 151/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| ||| ||| || || || ||||| || || || || ||||| ||| Sbjct 35 ACAAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCACTCAGGGTCCTTCCATCCTCG 94 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| | | |||||||| || || || || |||||||| || Sbjct 95 AGCTGCTTTCCAGCGAAGATCAACCTCTGTTGGTCAGGGGGGATTCCCTCTTTGTCCTGG 154 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || |||||| ||||| |||| ||| ||| || || || ||||| | || Sbjct 155 ATCTTGGCCTTGACATTCTCGATGGAGTC---ACTGGGCTCAACCTCGAGGGTGATGGTT 211 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | || || ||||| | ||||| Sbjct 212 TTGCCCGTAAGGGTCTTCACGAAAATCTGCAT 243 >seq17776 Length=453 Score = 95.1 bits (104), Expect = 3e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| |||||||| || | |||||||| || || || || |||||||| || || || Sbjct 84 CTTACCAGCGAAGATGAGCCTCTGTTGGTCAGGGGGGATTCCCTCTTTGTCCTGGATCTT 143 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||||||||||| ||| || || |||||||| | |||||||| || Sbjct 144 GGCCTTGACGTTCTCAATGGAGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTTCCGGT 203 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 | ||| || ||||| | |||||| Sbjct 204 GAGAGTCTTCACGAAGATCTGCATT 228 >seq17654 Length=470 Score = 95.1 bits (104), Expect = 3e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| |||||||| || | |||||||| || || || || |||||||| || || || Sbjct 95 CTTACCAGCGAAGATGAGCCTCTGTTGGTCAGGGGGGATTCCCTCTTTGTCCTGGATCTT 154 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||||||||||| ||| || || |||||||| | |||||||| || Sbjct 155 GGCCTTGACGTTCTCAATGGAGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTTCCGGT 214 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 | ||| || ||||| | |||||| Sbjct 215 GAGAGTCTTCACGAAGATCTGCATT 239 >seq15593 Length=744 Score = 95.1 bits (104), Expect = 3e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| |||||||| || | |||||||| || || || || |||||||| || || || Sbjct 70 CTTACCAGCGAAGATGAGCCTCTGTTGGTCAGGGGGGATTCCCTCTTTGTCCTGGATCTT 129 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||||||||||| ||| || || |||||||| | |||||||| || Sbjct 130 GGCCTTGACGTTCTCAATGGAGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTTCCGGT 189 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 | ||| || ||||| | |||||| Sbjct 190 GAGAGTCTTCACGAAGATCTGCATT 214 Score = 95.1 bits (104), Expect = 3e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| |||||||| || | |||||||| || || || || |||||||| || || || Sbjct 403 CTTACCAGCGAAGATGAGCCTCTGTTGGTCAGGGGGGATTCCCTCTTTGTCCTGGATCTT 462 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||||||||||| ||| || || |||||||| | |||||||| || Sbjct 463 GGCCTTGACGTTCTCAATGGAGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTTCCGGT 522 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 | ||| || ||||| | |||||| Sbjct 523 GAGAGTCTTCACGAAGATCTGCATT 547 >seq11240 Length=1475 Score = 86.0 bits (94), Expect = 1e-11 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| |||||||| | | |||||||| || || || || |||||||| || || || Sbjct 330 CTTACCAGCGAAGATGAACCTCTGTTGGTCAGGGGGGATTCCCTCTTTGTCCTGGATCTT 271 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||||||||||| ||| || || |||||||| | |||||||| || Sbjct 270 GGCCTTGACGTTCTCAATGGAGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTTCCGGT 211 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 | || || ||||| | |||||| Sbjct 210 GAGGGTCTTCACGAAGATCTGCATT 186 Score = 86.0 bits (94), Expect = 1e-11 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| |||||||| | | |||||||| || || || || |||||||| || || || Sbjct 665 CTTACCAGCGAAGATGAACCTCTGTTGGTCAGGGGGGATTCCCTCTTTGTCCTGGATCTT 606 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||||||||||| ||| || || |||||||| | |||||||| || Sbjct 605 GGCCTTGACGTTCTCAATGGAGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTTCCGGT 546 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 | || || ||||| | |||||| Sbjct 545 GAGGGTCTTCACGAAGATCTGCATT 521 Score = 86.0 bits (94), Expect = 1e-11 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| |||||||| | | |||||||| || || || || |||||||| || || || Sbjct 1001 CTTACCAGCGAAGATGAACCTCTGTTGGTCAGGGGGGATTCCCTCTTTGTCCTGGATCTT 942 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||||||||||| ||| || || |||||||| | |||||||| || Sbjct 941 GGCCTTGACGTTCTCAATGGAGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTTCCGGT 882 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 | || || ||||| | |||||| Sbjct 881 GAGGGTCTTCACGAAGATCTGCATT 857 Score = 86.0 bits (94), Expect = 1e-11 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| |||||||| | | |||||||| || || || || |||||||| || || || Sbjct 1336 CTTACCAGCGAAGATGAACCTCTGTTGGTCAGGGGGGATTCCCTCTTTGTCCTGGATCTT 1277 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||||||||||| ||| || || |||||||| | |||||||| || Sbjct 1276 GGCCTTGACGTTCTCAATGGAGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTTCCGGT 1217 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 | || || ||||| | |||||| Sbjct 1216 GAGGGTCTTCACGAAGATCTGCATT 1192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109169163393893