Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pleurobrachia_20bachei_20[genbank_20GCA_5F000695325.1_202014-05-21] 21,979 sequences; 156,121,975 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq384 107 2e-17 seq1866 104 2e-16 seq5648 100 2e-15 seq930 100 2e-15 seq44 100 2e-15 >seq384 Length=55996 Score = 107 bits (118), Expect = 2e-17 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 550355 ATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTA 550414 |||||| |||| || |||| | ||||| |||| || || || ||| |||| || Sbjct 46302 ATGAAAGAAACTGCAGAAGCTTATCTTGGTTCTAAAGTCACTGAGGCTGTAGTAACAGTC 46361 Query 550415 CCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGA 550474 || || || ||||||||| | || | || ||||||||||| ||| |||||||||| Sbjct 46362 CCTGCCTACTTTAATGACGCCCAGAGGGCCGCCACTAAAGATGCGGGAACTATTGCTGGA 46421 Query 550475 CTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGAT 550534 |||| | | ||||||||||| |||||||| ||||| |||| ||||| |||||| Sbjct 46422 CTTACCATCAGGAGAATTATCAATGAGCCTACTGCAGCTGCTATTGCTTATGGTCTTGAT 46481 Query 550535 AA 550536 || Sbjct 46482 AA 46483 >seq1866 Length=17415 Score = 104 bits (114), Expect = 2e-16 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 550355 ATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTA 550414 ||||| | |||||| |||| | | || | ||||||| | | || || | || || Sbjct 13466 ATGAAGGAGACAGCCGAGGCTTATATCGGAAAGGAAGTTAAGAACGCCGTTGTCACCGTC 13525 Query 550415 CCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGA 550474 || || || || || || | || | || || ||||| ||||| |||| ||||||||| Sbjct 13526 CCCGCCTACTTCAACGATGCCCAGAGGCAGGCCACTAAGGATGCCGGACTTATTGCTGGT 13585 Query 550475 CTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGAT 550534 || |||||| | | || ||||||||||||||||||||||| | || |||||| |||| Sbjct 13586 CTGAATGTTATGAGGATCATCAATGAACCTACTGCTGCTGCTATCGCTTATGGAATTGAC 13645 Query 550535 AA 550536 || Sbjct 13646 AA 13647 Score = 91.5 bits (100), Expect = 1e-12 Identities = 175/251 (70%), Gaps = 14/251 (6%) Strand=Plus/Plus Query 552115 ATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTC-GCGAAATGTTAAGT 552173 ||||||||||||||||||| |||||||| || ||||| || |||| || | ||| ||| Sbjct 14276 ATGAAATTGTGCTTGTTGGAGGATCTACCAGGATTCCCAAGATTCAGCAACTTGTCAAG- 14334 Query 552174 TCTTATTTCAATGGTAAAAAATTAAATGAAAGTG--TTAATCCAGATGAGGCTGTTGCCT 552231 ||||| |||| || || || | ||| | ||||||| |||||||||||||| | Sbjct 14335 GAGTATTTTGATGGAAAGGAACCAA--GCAAGGGAATTAATCCTGATGAGGCTGTTGCTT 14392 Query 552232 ATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGA-AAAACTACAAAAT 552290 |||| || || | || | || | | || |||||| || || | ||| | | Sbjct 14393 ATGGAGCTGCTGTACAGGGAGGTGTGCTCTCTGGA------GAGGACCAGACTTCTGGA- 14445 Query 552291 ATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATG 552350 ||||| || | ||||| || || | ||||| | || || ||||||||| ||||| Sbjct 14446 ATTGTGCTCCTTGATGTCTGCCCCCTGACCCTTGGAATTGAGACCGTTGGAGGTGTTATG 14505 Query 552351 ACTAATCTTAT 552361 || || || || Sbjct 14506 ACAAAGCTGAT 14516 >seq5648 Length=5288 Score = 100 bits (110), Expect = 2e-15 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 550394 ACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAA 550453 || ||||| || |||| || || || || || |||||||| || || ||||| || || Sbjct 3989 ACTGATGCCGTTGTAACAGTCCCTGCTTACTTCAATGACTCTCAGCGACAAGCCACCAAG 3930 Query 550454 GATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCT 550513 ||||||||| |||||||||||||| || || | || || ||||| |||||||| ||| Sbjct 3929 GATGCTGGAGTGATTGCTGGACTTAACGTGCTGAGGATCATTAATGAGCCTACTGCCGCT 3870 Query 550514 GCACTTGCATATGGACTTGATAA 550536 || | ||||| || || || || Sbjct 3869 GCTATCGCATACGGTCTGGACAA 3847 >seq930 Length=32570 Score = 100 bits (110), Expect = 2e-15 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 550394 ACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAA 550453 || ||||| || |||| || || || || || |||||||| || || ||||| || || Sbjct 4147 ACTGATGCCGTTGTAACAGTCCCTGCTTACTTCAATGACTCTCAGCGACAAGCCACCAAG 4088 Query 550454 GATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCT 550513 ||||||||| |||||||||||||| || || | || || ||||| |||||||| ||| Sbjct 4087 GATGCTGGAGTGATTGCTGGACTTAACGTGCTGAGGATCATTAATGAGCCTACTGCCGCT 4028 Query 550514 GCACTTGCATATGGACTTGATAA 550536 || | ||||| || || || || Sbjct 4027 GCTATCGCATACGGTCTGGACAA 4005 Score = 87.8 bits (96), Expect = 1e-11 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 550394 ACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAA 550453 || ||||| || |||| || || || || || || ||||| || || || || || ||| Sbjct 333 ACTGATGCTGTTGTAACAGTCCCTGCTTACTTCAACGACTCTCAGCGACAGGCCACCAAA 274 Query 550454 GATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCT 550513 || || ||| |||||||||||||| || || | || || ||||| |||||||| ||| Sbjct 273 GACGCCGGAGTGATTGCTGGACTTAACGTGCTGAGGATCATTAATGAGCCTACTGCCGCT 214 Query 550514 GCACTTGCATATGGACTTGATAA 550536 || | ||||| || || || || Sbjct 213 GCTATCGCATACGGTCTGGACAA 191 >seq44 Length=142889 Score = 100 bits (110), Expect = 2e-15 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 550394 ACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAA 550453 || ||||| || |||| || || || || || |||||||| || || ||||| || || Sbjct 48724 ACTGATGCCGTTGTAACAGTCCCTGCTTACTTCAATGACTCTCAGCGACAAGCCACCAAG 48783 Query 550454 GATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCT 550513 ||||||||| |||||||||||||| || || | || || ||||| |||||||| ||| Sbjct 48784 GATGCTGGAGTGATTGCTGGACTTAACGTGCTGAGGATCATTAATGAGCCTACTGCCGCT 48843 Query 550514 GCACTTGCATATGGACTTGATAA 550536 || | ||||| || || || || Sbjct 48844 GCTATCGCATACGGTCTGGACAA 48866 Score = 87.8 bits (96), Expect = 1e-11 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 550394 ACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAA 550453 || ||||| || |||| || || || || || || ||||| || || || || || ||| Sbjct 50090 ACTGATGCTGTTGTAACAGTCCCTGCTTACTTCAACGACTCTCAGCGACAGGCCACCAAA 50149 Query 550454 GATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCT 550513 || || ||| |||||||||||||| || || | || || ||||| |||||||| ||| Sbjct 50150 GACGCCGGAGTGATTGCTGGACTTAACGTGCTGAGGATCATTAATGAGCCTACTGCCGCT 50209 Query 550514 GCACTTGCATATGGACTTGATAA 550536 || | ||||| || || || || Sbjct 50210 GCTATCGCATACGGTCTGGACAA 50232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028133651354710