Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pleurobrachia_20bachei_20[genbank_20GCA_5F000695325.1_202014-05-21] 21,979 sequences; 156,121,975 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq384 98.7 6e-15 seq13598 87.8 1e-11 >seq384 Length=55996 Score = 98.7 bits (108), Expect = 6e-15 Identities = 135/187 (72%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 474692 ATGAAACAAACCGCG--AGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTG 474749 |||||| |||| || |||| |||||||| |||| ||||| || ||| | || | Sbjct 46302 ATGAAAGAAACTGCAGAAGCT--TATCTTGGTTCTAAAGTCACTGAGGCTGTAGTAACAG 46359 Query 474750 TTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAG 474809 | || || || |||||||| | || | || |||||||||||||||| ||||| | Sbjct 46360 TCCCTGCCTACTTTAATGACGCCCAGAGGGCCGCCACTAAAGATGCGGGAACTATTGCTG 46419 Query 474810 GTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTG 474869 | |||| | | ||||| ||||| || || ||||| || ||||||||||||||| Sbjct 46420 GACTTACCATCAGGAGAATTATCAATGAGCCTACTGCAGCTGCTATTGCTTATGGTCTTG 46479 Query 474870 ATAAGAA 474876 ||||||| Sbjct 46480 ATAAGAA 46486 >seq13598 Length=1024 Score = 87.8 bits (96), Expect = 1e-11 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || |||||||| ||||| ||||| || || || || | || || ||| || || Sbjct 23 CGGAGACGGAGGACAAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCACTCAGGGTC 82 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 || ||| || || ||||||||||| || || | | ||||| ||||| || ||||| Sbjct 83 CTTCCATCCTCGAGCTGCTTTCCAGCGAAGATCAACCTCTGTTGGTCAGGGGGGATTCCC 142 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 || ||||| || ||||| |||||| || || | ||| || | | || ||| Sbjct 143 TCTTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGAGTCACTGGGCTCAACCTCGAGG 202 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| || || || ||||| |||||||| || Sbjct 203 GTGATGGTTTTGCCCGTAAGGGTCTTCACGAAAATCTG 240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267236414047892