Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pleurobrachia_20bachei_20[genbank_20GCA_5F000695325.1_202014-05-21] 21,979 sequences; 156,121,975 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1866 149 5e-30 seq1696 138 8e-27 seq384 118 8e-21 >seq1866 Length=17415 Score = 149 bits (164), Expect = 5e-30 Identities = 197/273 (72%), Gaps = 3/273 (1%) Strand=Plus/Minus Query 282244 GAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAA 282303 ||| | ||||| |||| | ||| |||| |||||| || |||||||| | ||| || Sbjct 13735 GAACACTCCATTATCAATGGTCAACAGAGACACATCAAAAGTACCACCACCAAGATCGAA 13676 Query 282304 AATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGC 282363 | || | |||| | ||| || | | || |||| ||||| || | ||||||||| Sbjct 13675 CACCAGAATATTCTTCTCTCCCTCCT---TCTTGTCAATTCCATAAGCGATAGCAGCAGC 13619 Query 282364 AGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGT 282423 ||| |||||||| || || |||| |||||| ||||||||||| ||| ||||| ||||| Sbjct 13618 AGTAGGTTCATTGATGATCCTCATAACATTCAGACCAGCAATAAGTCCGGCATCCTTAGT 13559 Query 282424 GGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTC 282483 ||| || || || | |||||| || || || || || || | |||||| | | ||||| Sbjct 13558 GGCCTGCCTCTGGGCATCGTTGAAGTAGGCGGGGACGGTGACAACGGCGTTCTTAACTTC 13499 Query 282484 TTTTCCAATATAAGCGCTTGCTGTTTGTTTCAT 282516 ||||| |||||||| ||||| | ||||| Sbjct 13498 CTTTCCGATATAAGCCTCGGCTGTCTCCTTCAT 13466 Score = 118 bits (130), Expect = 8e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || |||| ||||| || | |||||| ||||| || ||||||||||| |||| |||| Sbjct 17382 TTCTTGTCAATTCCATAGGCGATAGCAGCGGCAGTGGGCTCATTAATAATCCTCATAACA 17323 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || |||||||| ||| ||||| ||||| || || || || | ||||| || || Sbjct 17322 TTCAGGCCAGCAATAAGTCCGGCATCCTTAGTAGCCTGCCTCTGGGCGTCGTTGAAGTAG 17263 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGT 282511 || || || || | |||||| | | ||||| |||||||| ||||| || |||| Sbjct 17262 GCGGGGACGGTGACAACGGCGTTCTTAACTTCCTTTCCAATGTAAGCCTCGGCAGTTTCC 17203 Query 282512 TTCAT 282516 ||||| Sbjct 17202 TTCAT 17198 >seq1696 Length=19484 Score = 138 bits (152), Expect = 8e-27 Identities = 457/709 (64%), Gaps = 19/709 (3%) Strand=Plus/Minus Query 282182 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 282241 || || || |||||||| || || || || | | || ||||| || |||| || || Sbjct 2399 ACCAGCCGGTTATCAAAGTCCTCTCCGCCAAGATGGGTGTTTCCAGATGTAGACCTCACC 2340 Query 282242 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCA 282301 | || | ||||| |||| |||| | | ||||||| || || ||||| | |||| Sbjct 2339 TCAAACACACCATCATCAATGGACAGGATTGAAACATCAAATGTACCCCCACCAAGATCA 2280 Query 282302 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTA---------TCAAGACCATACGCA 282352 || || || |||||| | || | ||| | | || | || || ||| Sbjct 2279 AATATCAGCACATTCTTCTCCACGACTTCCCCCTCAGCCCGGCGATCTAACCCGTAGGCA 2220 Query 282353 AAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCT 282412 | || || || || || || || |||||||||| |||||| || || ||||| ||| Sbjct 2219 ATGGCTGCTGCGGTGGGCTCGTTGATAATTCTCAGAACATTGAGCCCTGCAATCACCCCT 2160 Query 282413 GCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCA 282472 ||||| || || || || || ||||| || || || ||||| |||||||| | ||||||| Sbjct 2159 GCATCCTTCGTTGCCTGCCTCTGTGAGTCATTGAAGTATGCCGGAACAGTCACAACGGCA 2100 Query 282473 TCTGTTACTTCTTTT-CCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCAT 282531 ||| | || || || | || || || |||| ||||| |||| | | ||| Sbjct 2099 TCT-TCACACGTTCCACCCAGGTACGCCTCGGCAGTTTCCTTCATCTTACCCAGGACCAT 2041 Query 282532 TGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATA 282591 | || || | || ||| | | || | || | | || | || || | | Sbjct 2040 GGCGGATATCTCCTCCGGATAGAACAGCCTCCGTTTACCCTTGTACGCCACCTCTATCTT 1981 Query 282592 TGGTTTATTACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACT 282651 ||||| | |||| || || ||||| ||||| | | | |||| |||| || Sbjct 1980 CGGTTTGTCGTTTTCATTGATGACATTAAAGGGCCAGTGCATAAGATCTTCCTGAATACA 1921 Query 282652 TTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATT 282711 || |||| | | | || ||||| || | || |||||||| | || || || || Sbjct 1920 TTCGTCAGTGTAGCCCCTGCCAATCAACCTCTTGGCATCAAACACGGTGTTCTGGGGGTT 1861 Query 282712 AACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTC----TCTGTAAATG 282767 ||| | || | ||| || |||||||||| ||| |||||| || || |||| Sbjct 1860 GTACGCACCCTGCTGTTTCGCCGCATCTCCAACCAG----TCTGTCAATGTCCGTGAATG 1805 Query 282768 AAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCAT 282827 || || || || || |||| || || || ||||||||||| ||||| |||| Sbjct 1804 CCACGTAACTGGGCGTGGTCCGATGGCCCATGTCGTTAGCAATAATTTCCACTTTTCCAT 1745 Query 282828 TTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAAT 282876 | || | || || |||||||| | ||||| || |||||||| ||||| Sbjct 1744 TCTGGTAGACCCCCACACAACTGTATGTTGTACCCAAATCAATCCCAAT 1696 >seq384 Length=55996 Score = 118 bits (130), Expect = 8e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || |||||||||||||| |||| |||||| ||||| || ||||| ||||||||| | Sbjct 46486 TTCTTATCAAGACCATAAGCAATAGCAGCTGCAGTAGGCTCATTGATAATTCTCCTGATG 46427 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 |||| |||||||| |||| |||||||||||||| || || | || ||||| || Sbjct 46426 GTAAGTCCAGCAATAGTTCCCGCATCTTTAGTGGCGGCCCTCTGGGCGTCATTAAAGTAG 46367 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGT 282511 ||||| || || | || || || || |||| |||| |||||| ||| |||| | Sbjct 46366 GCAGGGACTGTTACTACAGCCTCAGTGACTTTAGAACCAAGATAAGCTTCTGCAGTTTCT 46307 Query 282512 TTCAT 282516 ||||| Sbjct 46306 TTCAT 46302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739551323983254