Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pleurobrachia_20bachei_20[genbank_20GCA_5F000695325.1_202014-05-21] 21,979 sequences; 156,121,975 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq18 114 1e-20 seq17776 109 6e-19 seq17654 109 6e-19 seq15593 109 6e-19 seq11240 104 3e-17 >seq18 Length=176966 Score = 114 bits (126), Expect = 1e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| || || || ||||| || || || ||||||||| | || Sbjct 84810 ATGCAAATCTTTGTCAAGACCCTCACGGGTAAGACAATCACCCTCGAGGTTGAGCCTAGT 84869 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || ||| | ||| | ||||| ||||| |||||||||||||||||||| || ||||| Sbjct 84870 GACTCCATCGAGAATGTTAAGGCCAAAATCCAGGACAAGGAGGGAATTCCCCCTGACCAA 84929 Query 27526 CAGCGTCTAATTTTTGCTGGT 27546 ||| | | || || || ||| Sbjct 84930 CAGAGGTTGATCTTCGCCGGT 84950 >seq17776 Length=453 Score = 109 bits (120), Expect = 6e-19 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| || ||||| ||||| || || |||||||||||| | | Sbjct 228 AATGCAGATCTTCGTGAAGACTCTCACCGGAAAGACCATCACCCTTGAGGTTGAGCCCAG 169 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || ||||| || | ||||| || || |||||||| |||||||| || || ||||| Sbjct 168 CGACTCCATTGAGAACGTCAAGGCCAAGATCCAGGACAAAGAGGGAATCCCCCCTGACCA 109 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 ||| | || || || ||||||||| Sbjct 108 ACAGAGGCTCATCTTCGCTGGTAAG 84 >seq17654 Length=470 Score = 109 bits (120), Expect = 6e-19 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| || ||||| ||||| || || |||||||||||| | | Sbjct 239 AATGCAGATCTTCGTGAAGACTCTCACCGGAAAGACCATCACCCTTGAGGTTGAGCCCAG 180 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || ||||| || | ||||| || || |||||||| |||||||| || || ||||| Sbjct 179 CGACTCCATTGAGAACGTCAAGGCCAAGATCCAGGACAAAGAGGGAATCCCCCCTGACCA 120 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 ||| | || || || ||||||||| Sbjct 119 ACAGAGGCTCATCTTCGCTGGTAAG 95 >seq15593 Length=744 Score = 109 bits (120), Expect = 6e-19 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| || ||||| ||||| || || |||||||||||| | | Sbjct 214 AATGCAGATCTTCGTGAAGACTCTCACCGGAAAGACCATCACCCTTGAGGTTGAGCCCAG 155 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || ||||| || | ||||| || || |||||||| |||||||| || || ||||| Sbjct 154 CGACTCCATTGAGAACGTCAAGGCCAAGATCCAGGACAAAGAGGGAATCCCCCCTGACCA 95 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 ||| | || || || ||||||||| Sbjct 94 ACAGAGGCTCATCTTCGCTGGTAAG 70 Score = 109 bits (120), Expect = 6e-19 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| || ||||| ||||| || || |||||||||||| | | Sbjct 547 AATGCAGATCTTCGTGAAGACTCTCACCGGAAAGACCATCACCCTTGAGGTTGAGCCCAG 488 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || ||||| || | ||||| || || |||||||| |||||||| || || ||||| Sbjct 487 CGACTCCATTGAGAACGTCAAGGCCAAGATCCAGGACAAAGAGGGAATCCCCCCTGACCA 428 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 ||| | || || || ||||||||| Sbjct 427 ACAGAGGCTCATCTTCGCTGGTAAG 403 >seq11240 Length=1475 Score = 104 bits (114), Expect = 3e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| || ||||| ||||| || || |||||||||||| | | Sbjct 186 AATGCAGATCTTCGTGAAGACCCTCACCGGAAAGACCATCACCCTTGAGGTTGAGCCCAG 245 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || ||||| || | ||||| || || |||||||| |||||||| || || ||||| Sbjct 246 CGACTCCATTGAGAACGTCAAGGCCAAGATCCAGGACAAAGAGGGAATCCCCCCTGACCA 305 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 ||| | | || || ||||||||| Sbjct 306 ACAGAGGTTCATCTTCGCTGGTAAG 330 Score = 104 bits (114), Expect = 3e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| || ||||| ||||| || || |||||||||||| | | Sbjct 521 AATGCAGATCTTCGTGAAGACCCTCACCGGAAAGACCATCACCCTTGAGGTTGAGCCCAG 580 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || ||||| || | ||||| || || |||||||| |||||||| || || ||||| Sbjct 581 CGACTCCATTGAGAACGTCAAGGCCAAGATCCAGGACAAAGAGGGAATCCCCCCTGACCA 640 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 ||| | | || || ||||||||| Sbjct 641 ACAGAGGTTCATCTTCGCTGGTAAG 665 Score = 104 bits (114), Expect = 3e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| || ||||| ||||| || || |||||||||||| | | Sbjct 857 AATGCAGATCTTCGTGAAGACCCTCACCGGAAAGACCATCACCCTTGAGGTTGAGCCCAG 916 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || ||||| || | ||||| || || |||||||| |||||||| || || ||||| Sbjct 917 CGACTCCATTGAGAACGTCAAGGCCAAGATCCAGGACAAAGAGGGAATCCCCCCTGACCA 976 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 ||| | | || || ||||||||| Sbjct 977 ACAGAGGTTCATCTTCGCTGGTAAG 1001 Score = 104 bits (114), Expect = 3e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| || ||||| ||||| || || |||||||||||| | | Sbjct 1192 AATGCAGATCTTCGTGAAGACCCTCACCGGAAAGACCATCACCCTTGAGGTTGAGCCCAG 1251 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || ||||| || | ||||| || || |||||||| |||||||| || || ||||| Sbjct 1252 CGACTCCATTGAGAACGTCAAGGCCAAGATCCAGGACAAAGAGGGAATCCCCCCTGACCA 1311 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 ||| | | || || ||||||||| Sbjct 1312 ACAGAGGTTCATCTTCGCTGGTAAG 1336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570153714346480