Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pleurobrachia_20bachei_20[genbank_20GCA_5F000695325.1_202014-05-21] 21,979 sequences; 156,121,975 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq13598 167 5e-36 seq17776 113 1e-19 seq17654 113 1e-19 seq15593 113 1e-19 seq18 109 1e-18 seq11240 104 5e-17 seq2440 98.7 2e-15 seq19535 91.5 3e-13 seq61 91.5 3e-13 >seq13598 Length=1024 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||||||||| ||| ||| || |||||||| || || |||||||||||||| Sbjct 32 AGGACAAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCACTCAGGGTCCTTCCATCC 91 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| | | ||||||||||| || | ||| || |||||| Sbjct 92 TCGAGCTGCTTTCCAGCGAAGATCAACCTCTGTTGGTCAGGGGGGATTCCCTCTTTGTCC 151 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||| |||| | ||||||||||| ||||| || Sbjct 152 TGGATCTTGGCCTTGACATTCTCGATGGAGTCACTGGGCTCAACCTCGAGGGTGATGGTT 211 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| || || | |||||| Sbjct 212 TTGCCCGTAAGGGTCTTCACGAAAATCTGCAT 243 >seq17776 Length=453 Score = 113 bits (124), Expect = 1e-19 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || |||||||| || | ||||||||||| || | ||| || |||||||||||||| Sbjct 84 CTTACCAGCGAAGATGAGCCTCTGTTGGTCAGGGGGGATTCCCTCTTTGTCCTGGATCTT 143 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || ||||| || |||| ||| | |||||||| || ||||| |||||||| || Sbjct 144 GGCCTTGACGTTCTCAATGGAGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTTCCGGT 203 Query 211091 GAGAGTCTTTACAAACACCTGCATT 211115 ||||||||| || || | ||||||| Sbjct 204 GAGAGTCTTCACGAAGATCTGCATT 228 >seq17654 Length=470 Score = 113 bits (124), Expect = 1e-19 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || |||||||| || | ||||||||||| || | ||| || |||||||||||||| Sbjct 95 CTTACCAGCGAAGATGAGCCTCTGTTGGTCAGGGGGGATTCCCTCTTTGTCCTGGATCTT 154 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || ||||| || |||| ||| | |||||||| || ||||| |||||||| || Sbjct 155 GGCCTTGACGTTCTCAATGGAGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTTCCGGT 214 Query 211091 GAGAGTCTTTACAAACACCTGCATT 211115 ||||||||| || || | ||||||| Sbjct 215 GAGAGTCTTCACGAAGATCTGCATT 239 >seq15593 Length=744 Score = 113 bits (124), Expect = 1e-19 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || |||||||| || | ||||||||||| || | ||| || |||||||||||||| Sbjct 70 CTTACCAGCGAAGATGAGCCTCTGTTGGTCAGGGGGGATTCCCTCTTTGTCCTGGATCTT 129 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || ||||| || |||| ||| | |||||||| || ||||| |||||||| || Sbjct 130 GGCCTTGACGTTCTCAATGGAGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTTCCGGT 189 Query 211091 GAGAGTCTTTACAAACACCTGCATT 211115 ||||||||| || || | ||||||| Sbjct 190 GAGAGTCTTCACGAAGATCTGCATT 214 Score = 113 bits (124), Expect = 1e-19 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || |||||||| || | ||||||||||| || | ||| || |||||||||||||| Sbjct 403 CTTACCAGCGAAGATGAGCCTCTGTTGGTCAGGGGGGATTCCCTCTTTGTCCTGGATCTT 462 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || ||||| || |||| ||| | |||||||| || ||||| |||||||| || Sbjct 463 GGCCTTGACGTTCTCAATGGAGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTTCCGGT 522 Query 211091 GAGAGTCTTTACAAACACCTGCATT 211115 ||||||||| || || | ||||||| Sbjct 523 GAGAGTCTTCACGAAGATCTGCATT 547 >seq18 Length=176966 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || |||||||| | | ||||||||||| |||| ||| |||||||||||||| || Sbjct 84949 CCGGCGAAGATCAACCTCTGTTGGTCAGGGGGAATTCCCTCCTTGTCCTGGATTTTGGCC 84890 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || || || ||||||| |||| ||||||||||| ||||| ||||| |||||||| Sbjct 84889 TTAACATTCTCGATGGAGTCACTAGGCTCAACCTCGAGGGTGATTGTCTTACCCGTGAGG 84830 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| ||||| | ||||| Sbjct 84829 GTCTTGACAAAGATTTGCAT 84810 >seq11240 Length=1475 Score = 104 bits (114), Expect = 5e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || |||||||| | | ||||||||||| || | ||| || |||||||||||||| Sbjct 330 CTTACCAGCGAAGATGAACCTCTGTTGGTCAGGGGGGATTCCCTCTTTGTCCTGGATCTT 271 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || ||||| || |||| ||| | |||||||| || ||||| |||||||| || Sbjct 270 GGCCTTGACGTTCTCAATGGAGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTTCCGGT 211 Query 211091 GAGAGTCTTTACAAACACCTGCATT 211115 ||| ||||| || || | ||||||| Sbjct 210 GAGGGTCTTCACGAAGATCTGCATT 186 Score = 104 bits (114), Expect = 5e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || |||||||| | | ||||||||||| || | ||| || |||||||||||||| Sbjct 665 CTTACCAGCGAAGATGAACCTCTGTTGGTCAGGGGGGATTCCCTCTTTGTCCTGGATCTT 606 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || ||||| || |||| ||| | |||||||| || ||||| |||||||| || Sbjct 605 GGCCTTGACGTTCTCAATGGAGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTTCCGGT 546 Query 211091 GAGAGTCTTTACAAACACCTGCATT 211115 ||| ||||| || || | ||||||| Sbjct 545 GAGGGTCTTCACGAAGATCTGCATT 521 Score = 104 bits (114), Expect = 5e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || |||||||| | | ||||||||||| || | ||| || |||||||||||||| Sbjct 1001 CTTACCAGCGAAGATGAACCTCTGTTGGTCAGGGGGGATTCCCTCTTTGTCCTGGATCTT 942 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || ||||| || |||| ||| | |||||||| || ||||| |||||||| || Sbjct 941 GGCCTTGACGTTCTCAATGGAGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTTCCGGT 882 Query 211091 GAGAGTCTTTACAAACACCTGCATT 211115 ||| ||||| || || | ||||||| Sbjct 881 GAGGGTCTTCACGAAGATCTGCATT 857 Score = 104 bits (114), Expect = 5e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || |||||||| | | ||||||||||| || | ||| || |||||||||||||| Sbjct 1336 CTTACCAGCGAAGATGAACCTCTGTTGGTCAGGGGGGATTCCCTCTTTGTCCTGGATCTT 1277 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || ||||| || |||| ||| | |||||||| || ||||| |||||||| || Sbjct 1276 GGCCTTGACGTTCTCAATGGAGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTTCCGGT 1217 Query 211091 GAGAGTCTTTACAAACACCTGCATT 211115 ||| ||||| || || | ||||||| Sbjct 1216 GAGGGTCTTCACGAAGATCTGCATT 1192 >seq2440 Length=13695 Score = 98.7 bits (108), Expect = 2e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 210996 TGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCA 211055 |||||||| || | ||| || |||||||||||||| || ||||| ||||||| |||| Sbjct 1 TGGTCAGGGGGGATTCCCTCTTTGTCCTGGATCTTAGCCTTGACGTTCTCGATGGAGTCA 60 Query 211056 GAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | ||||||||||| ||||| || || |||||||| ||||| || || | |||||| Sbjct 61 CTGGGCTCAACCTCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTCACGAAAATCTGCAT 119 >seq19535 Length=5754 Score = 91.5 bits (100), Expect = 3e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210900 CTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCA 210959 || || |||||||| |||||| ||| ||||||||||| || || || | | | | Sbjct 2991 CTCAGCACAAGGTGCAGAGTGCTCTCCTTTTGGATGTTGTAGTCAGCTACAGATCGGTTA 3050 Query 210960 TCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTG 211019 || || |||||||| || || |||||||| | ||||| || || |||| || || | Sbjct 3051 TCCTCAAGCTGCTTCCCGGCAAAGATAAGCCTCTGTTGATCTGGTGGAATCCCCTCTCTA 3110 Query 211020 TCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATC 211079 || ||||| | ||||||| | ||||||| | | || |||| |||||||| | Sbjct 3111 TCTTGGATTCTCTGTTTCAACTCCCCGATGGTCATACAACTCTCAAAATCGAGAGTTACA 3170 Query 211080 GTCTTTCCCGTGAGAGTCTTTAC 211102 || || ||||| | ||||| || Sbjct 3171 GTTTTCCCCGTCAATGTCTTGAC 3193 >seq61 Length=124260 Score = 91.5 bits (100), Expect = 3e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210900 CTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCA 210959 || || |||||||| |||||| ||| ||||||||||| || || || | | | | Sbjct 92332 CTCAGCACAAGGTGCAGAGTGCTCTCCTTTTGGATGTTGTAGTCAGCTACAGATCGGTTA 92391 Query 210960 TCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTG 211019 || || |||||||| || || |||||||| | ||||| || || |||| || || | Sbjct 92392 TCCTCAAGCTGCTTCCCGGCAAAGATAAGCCTCTGTTGATCTGGTGGAATCCCCTCTCTA 92451 Query 211020 TCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATC 211079 || ||||| | ||||||| | ||||||| | | || |||| |||||||| | Sbjct 92452 TCTTGGATTCTCTGTTTCAACTCCCCGATGGTCATACAACTCTCAAAATCGAGAGTTACA 92511 Query 211080 GTCTTTCCCGTGAGAGTCTTTAC 211102 || || ||||| | ||||| || Sbjct 92512 GTTTTCCCCGTCAATGTCTTGAC 92534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158825575914335