Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pleurobrachia_20bachei_20[genbank_20GCA_5F000695325.1_202014-05-21] 21,979 sequences; 156,121,975 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq78 86.0 9e-12 seq61 84.2 3e-11 >seq78 Length=110691 Score = 86.0 bits (94), Expect = 9e-12 Identities = 183/273 (67%), Gaps = 3/273 (1%) Strand=Plus/Plus Query 171053 GAAGTAAAATATGATGGTGAACGAGTCCAAGTTCATAAAAACAATAATAATTTTGCCTTC 171112 ||| | |||||||| || || | |||||| | || ||||| | || | || || Sbjct 102438 GAAATCAAATATGACGGAGAGAGGGTCCAACTCCACAAAAAGGACAAAGAGTTCCAGTTT 102497 Query 171113 TTTAGCAGAAACATGAAACCAGTTTTACCACATAAAGTTGATTATCTCAAGGAATACCTT 171172 |||||| | | | |||||||||||||||| || || || | || | || || | | Sbjct 102498 TTTAGCCGCAGCTTGAAACCAGTTTTACCGCACAAGGTGAAAGATGTAAAAGAGTTTGTG 102557 Query 171173 CCTAAAGCATTTAAAAAAGCTACCTCTATTATCTTGGATTCCGAAATTGTTCTAGTTGAT 171232 || ||||||||| | | | |||| | || | || | ||| || | |||||||| Sbjct 102558 CCCAAAGCATTTCCCACTGGAAACTCTCTGATTCTAGACTGTGAAGTTCTGTTAGTTGAT 102617 Query 171233 GAACATAATGTT---CCACTTCCGTTTGGAAGTCTAGGAATACACAAAAAGAAAGAGTAC 171289 | | | || | || ||||| ||||||| ||| || ||||||| ||| | ||| Sbjct 102618 AACAACACTGGTAAACCCCTTCCCTTTGGAACTCTGGGTGTACACAAGAAGGAGCAGTTT 102677 Query 171290 AAAAATGCTAATATGTGTTTGTTCGTCTTTGAT 171322 || | ||| | | |||| ||||| || |||||| Sbjct 102678 AAGAGTGCCAGTGTGTGCTTGTTTGTGTTTGAT 102710 >seq61 Length=124260 Score = 84.2 bits (92), Expect = 3e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 48417 TCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAA 48476 || |||| |||| |||||||| ||||| | ||| ||||| || | |||||||| ||| Sbjct 5152 TCAATTAGAAGAGAGTACATTTCTGAGTGTACATTCTCAATGGCAACTTGAAATCCATAA 5093 Query 48477 AAACATCTCGCTTCTGTGATCTGTACCTC 48505 ||||||||||||||||||| ||| || || Sbjct 5092 AAACATCTCGCTTCTGTGACCTGAACTTC 5064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694477948430560