Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pleurobrachia_20bachei_20[genbank_20GCA_5F000695325.1_202014-05-21] 21,979 sequences; 156,121,975 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq13598 111 4e-19 seq19535 84.2 5e-11 seq17776 84.2 5e-11 seq17654 84.2 5e-11 seq15593 84.2 5e-11 seq61 84.2 5e-11 >seq13598 Length=1024 Score = 111 bits (122), Expect = 4e-19 Identities = 161/224 (72%), Gaps = 10/224 (4%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||||||||| ||||| || ||| || ||||||||||| || | || || Sbjct 25 GAGACGGAGGACAAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCACTCAGGGTCCT 84 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 ||||| || || ||||| || |||||||| | |||||| ||||| | | |||||| Sbjct 85 TCCATCCTCGAGCTGCTTT--CCAGCGAAGATCAACCTCTGTTGGTCAGGGGGGATTCCC 142 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 || || || || || || |||||| |||| | | ||| ||| ||| || || Sbjct 143 TCTTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGAGTC---ACTGGGCTCAACCTCG 199 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||||||||| || ||||||||||| | |||||| Sbjct 200 AGGGTGATGGTTTTGCCCGTAAGGGTCTTCACGAAAATCTGCAT 243 >seq19535 Length=5754 Score = 84.2 bits (92), Expect = 5e-11 Identities = 144/206 (70%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 151890 CTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCA 151949 || || ||||| || ||||| ||| |||||||||||||| || |||| || || | Sbjct 2991 CTCAGCACAAGGTGCAGAGTGCTCTCCTTTTGGATGTTGTAGTCAGCTACAGATCGGTTA 3050 Query 151950 TCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 || || || |||||||| |||||||||||||| || || | | || || || | Sbjct 3051 TCCTCAAGCTGCTTCCCGGCAAAGATAAGCCTCTGTTGATCTGGTGGAATCCCCTCTCTA 3110 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCT-GTC--TGAACTCTCTACTTCAAGAGTA 152066 ||||| ||| | ||||| | ||| || | ||| ||||||| | || ||||| Sbjct 3111 TCTTGGATTCTCTGTTTCA---ACTCCCCGATGGTCATACAACTCTCAAAATCGAGAGTT 3167 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCAC 152092 | |||||| ||||| | ||||| || Sbjct 3168 ACAGTTTTCCCCGTCAATGTCTTGAC 3193 >seq17776 Length=453 Score = 84.2 bits (92), Expect = 5e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || |||||||| |||||||| ||||| | | |||||| || || || || || || Sbjct 85 TTACCAGCGAAGATGAGCCTCTGTTGGTCAGGGGGGATTCCCTCTTTGTCCTGGATCTTG 144 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||||| |||| | | ||| ||| || ||||| || || || || || ||| Sbjct 145 GCCTTGACGTTCTCAATGGAGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTTCCGGTG 204 Query 152082 AGAGTCTTCACGAAGACCTGCATT 152105 |||||||||||||||| ||||||| Sbjct 205 AGAGTCTTCACGAAGATCTGCATT 228 >seq17654 Length=470 Score = 84.2 bits (92), Expect = 5e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || |||||||| |||||||| ||||| | | |||||| || || || || || || Sbjct 96 TTACCAGCGAAGATGAGCCTCTGTTGGTCAGGGGGGATTCCCTCTTTGTCCTGGATCTTG 155 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||||| |||| | | ||| ||| || ||||| || || || || || ||| Sbjct 156 GCCTTGACGTTCTCAATGGAGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTTCCGGTG 215 Query 152082 AGAGTCTTCACGAAGACCTGCATT 152105 |||||||||||||||| ||||||| Sbjct 216 AGAGTCTTCACGAAGATCTGCATT 239 >seq15593 Length=744 Score = 84.2 bits (92), Expect = 5e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || |||||||| |||||||| ||||| | | |||||| || || || || || || Sbjct 71 TTACCAGCGAAGATGAGCCTCTGTTGGTCAGGGGGGATTCCCTCTTTGTCCTGGATCTTG 130 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||||| |||| | | ||| ||| || ||||| || || || || || ||| Sbjct 131 GCCTTGACGTTCTCAATGGAGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTTCCGGTG 190 Query 152082 AGAGTCTTCACGAAGACCTGCATT 152105 |||||||||||||||| ||||||| Sbjct 191 AGAGTCTTCACGAAGATCTGCATT 214 Score = 84.2 bits (92), Expect = 5e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || |||||||| |||||||| ||||| | | |||||| || || || || || || Sbjct 404 TTACCAGCGAAGATGAGCCTCTGTTGGTCAGGGGGGATTCCCTCTTTGTCCTGGATCTTG 463 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||||| |||| | | ||| ||| || ||||| || || || || || ||| Sbjct 464 GCCTTGACGTTCTCAATGGAGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTTCCGGTG 523 Query 152082 AGAGTCTTCACGAAGACCTGCATT 152105 |||||||||||||||| ||||||| Sbjct 524 AGAGTCTTCACGAAGATCTGCATT 547 >seq61 Length=124260 Score = 84.2 bits (92), Expect = 5e-11 Identities = 144/206 (70%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 151890 CTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCA 151949 || || ||||| || ||||| ||| |||||||||||||| || |||| || || | Sbjct 92332 CTCAGCACAAGGTGCAGAGTGCTCTCCTTTTGGATGTTGTAGTCAGCTACAGATCGGTTA 92391 Query 151950 TCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 || || || |||||||| |||||||||||||| || || | | || || || | Sbjct 92392 TCCTCAAGCTGCTTCCCGGCAAAGATAAGCCTCTGTTGATCTGGTGGAATCCCCTCTCTA 92451 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCT-GTC--TGAACTCTCTACTTCAAGAGTA 152066 ||||| ||| | ||||| | ||| || | ||| ||||||| | || ||||| Sbjct 92452 TCTTGGATTCTCTGTTTCA---ACTCCCCGATGGTCATACAACTCTCAAAATCGAGAGTT 92508 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCAC 152092 | |||||| ||||| | ||||| || Sbjct 92509 ACAGTTTTCCCCGTCAATGTCTTGAC 92534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153495877211909