Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pleurobrachia_20bachei_20[genbank_20GCA_5F000695325.1_202014-05-21] 21,979 sequences; 156,121,975 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq13598 149 2e-30 seq17776 116 9e-21 seq17654 116 9e-21 seq15593 116 9e-21 seq2440 113 1e-19 seq11240 107 5e-18 seq18 84.2 5e-11 >seq13598 Length=1024 Score = 149 bits (164), Expect = 2e-30 Identities = 159/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || ||||||||||| || || || || ||||| |||||||||||||| || || ||| Sbjct 240 CAGATTTTCGTGAAGACCCTTACGGGCAAAACCATCACCCTCGAGGTTGA--GCCCAGTG 183 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || |||||||||| ||||| ||||| ||||||||||| |||||||| || ||||| | Sbjct 182 ACTCCATCGAGAATGTCAAGGCCAAGATCCAGGACAAAGAGGGAATCCCCCCTGACCAAC 123 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | |||||||| ||||| |||||||| ||||||||||| || || || ||| Sbjct 122 AGAGGTTGATCTTCGCTGGAAAGCAGCTCGAGGATGGAAGGACCCTGAGTGACTACAACA 63 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || ||||| Sbjct 62 TCCAGAAGGAGAGCACCCTTCACCTTGT 35 >seq17776 Length=453 Score = 116 bits (128), Expect = 9e-21 Identities = 112/142 (79%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| |||||||| ||||| || |||||||| ||||| || || ||| Sbjct 224 CAGATCTTCGTGAAGACTCTCACCGGAAAGACCATCACCCTTGAGGTTGA--GCCCAGCG 167 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || |||| ||||||||||| ||||| ||||||||||| |||||||| || ||||| | Sbjct 166 ACTCCATTGAGAACGTCAAGGCCAAGATCCAGGACAAAGAGGGAATCCCCCCTGACCAAC 107 Query 178042 AACGACTTATCTTCGCCGGAAA 178063 | | || |||||||| || || Sbjct 106 AGAGGCTCATCTTCGCTGGTAA 85 >seq17654 Length=470 Score = 116 bits (128), Expect = 9e-21 Identities = 112/142 (79%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| |||||||| ||||| || |||||||| ||||| || || ||| Sbjct 235 CAGATCTTCGTGAAGACTCTCACCGGAAAGACCATCACCCTTGAGGTTGA--GCCCAGCG 178 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || |||| ||||||||||| ||||| ||||||||||| |||||||| || ||||| | Sbjct 177 ACTCCATTGAGAACGTCAAGGCCAAGATCCAGGACAAAGAGGGAATCCCCCCTGACCAAC 118 Query 178042 AACGACTTATCTTCGCCGGAAA 178063 | | || |||||||| || || Sbjct 117 AGAGGCTCATCTTCGCTGGTAA 96 >seq15593 Length=744 Score = 116 bits (128), Expect = 9e-21 Identities = 112/142 (79%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| |||||||| ||||| || |||||||| ||||| || || ||| Sbjct 210 CAGATCTTCGTGAAGACTCTCACCGGAAAGACCATCACCCTTGAGGTTGA--GCCCAGCG 153 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || |||| ||||||||||| ||||| ||||||||||| |||||||| || ||||| | Sbjct 152 ACTCCATTGAGAACGTCAAGGCCAAGATCCAGGACAAAGAGGGAATCCCCCCTGACCAAC 93 Query 178042 AACGACTTATCTTCGCCGGAAA 178063 | | || |||||||| || || Sbjct 92 AGAGGCTCATCTTCGCTGGTAA 71 Score = 116 bits (128), Expect = 9e-21 Identities = 112/142 (79%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| |||||||| ||||| || |||||||| ||||| || || ||| Sbjct 543 CAGATCTTCGTGAAGACTCTCACCGGAAAGACCATCACCCTTGAGGTTGA--GCCCAGCG 486 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || |||| ||||||||||| ||||| ||||||||||| |||||||| || ||||| | Sbjct 485 ACTCCATTGAGAACGTCAAGGCCAAGATCCAGGACAAAGAGGGAATCCCCCCTGACCAAC 426 Query 178042 AACGACTTATCTTCGCCGGAAA 178063 | | || |||||||| || || Sbjct 425 AGAGGCTCATCTTCGCTGGTAA 404 >seq2440 Length=13695 Score = 113 bits (124), Expect = 1e-19 Identities = 97/118 (82%), Gaps = 4/118 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || ||||||||||| || ||||| || ||||| |||||||||||||| || || ||| Sbjct 116 CAGATTTTCGTGAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTTGA--GCCCAGTG 59 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCA 178039 || |||||||||||||||| ||||| ||||||||||| |||||||| || ||||| Sbjct 58 ACTCCATCGAGAACGTCAAGGCTAAGATCCAGGACAAAGAGGGAATCCCCCCTGACCA 1 >seq11240 Length=1475 Score = 107 bits (118), Expect = 5e-18 Identities = 110/142 (77%), Gaps = 4/142 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || ||||| ||||| || |||||||| ||||| || || ||| Sbjct 190 CAGATCTTCGTGAAGACCCTCACCGGAAAGACCATCACCCTTGAGGTTGA--GCCCAGCG 247 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || |||| ||||||||||| ||||| ||||||||||| |||||||| || ||||| | Sbjct 248 ACTCCATTGAGAACGTCAAGGCCAAGATCCAGGACAAAGAGGGAATCCCCCCTGACCAAC 307 Query 178042 AACGACTTATCTTCGCCGGAAA 178063 | | | |||||||| || || Sbjct 308 AGAGGTTCATCTTCGCTGGTAA 329 Score = 107 bits (118), Expect = 5e-18 Identities = 110/142 (77%), Gaps = 4/142 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || ||||| ||||| || |||||||| ||||| || || ||| Sbjct 525 CAGATCTTCGTGAAGACCCTCACCGGAAAGACCATCACCCTTGAGGTTGA--GCCCAGCG 582 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || |||| ||||||||||| ||||| ||||||||||| |||||||| || ||||| | Sbjct 583 ACTCCATTGAGAACGTCAAGGCCAAGATCCAGGACAAAGAGGGAATCCCCCCTGACCAAC 642 Query 178042 AACGACTTATCTTCGCCGGAAA 178063 | | | |||||||| || || Sbjct 643 AGAGGTTCATCTTCGCTGGTAA 664 Score = 107 bits (118), Expect = 5e-18 Identities = 110/142 (77%), Gaps = 4/142 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || ||||| ||||| || |||||||| ||||| || || ||| Sbjct 861 CAGATCTTCGTGAAGACCCTCACCGGAAAGACCATCACCCTTGAGGTTGA--GCCCAGCG 918 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || |||| ||||||||||| ||||| ||||||||||| |||||||| || ||||| | Sbjct 919 ACTCCATTGAGAACGTCAAGGCCAAGATCCAGGACAAAGAGGGAATCCCCCCTGACCAAC 978 Query 178042 AACGACTTATCTTCGCCGGAAA 178063 | | | |||||||| || || Sbjct 979 AGAGGTTCATCTTCGCTGGTAA 1000 Score = 107 bits (118), Expect = 5e-18 Identities = 110/142 (77%), Gaps = 4/142 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || ||||| ||||| || |||||||| ||||| || || ||| Sbjct 1196 CAGATCTTCGTGAAGACCCTCACCGGAAAGACCATCACCCTTGAGGTTGA--GCCCAGCG 1253 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || |||| ||||||||||| ||||| ||||||||||| |||||||| || ||||| | Sbjct 1254 ACTCCATTGAGAACGTCAAGGCCAAGATCCAGGACAAAGAGGGAATCCCCCCTGACCAAC 1313 Query 178042 AACGACTTATCTTCGCCGGAAA 178063 | | | |||||||| || || Sbjct 1314 AGAGGTTCATCTTCGCTGGTAA 1335 >seq18 Length=176966 Score = 84.2 bits (92), Expect = 5e-11 Identities = 103/139 (74%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 ||||| || || || || ||||| || || || |||||||||||||| | ||| | | Sbjct 84813 CAAATCTTTGTCAAGACCCTCACGGGTAAGACAATCACCCTCGAGGTTG--AGCCTAGTG 84870 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || |||||||||| || || || || |||||||| || ||||| || || ||||| | Sbjct 84871 ACTCCATCGAGAATGTTAAGGCCAAAATCCAGGACAAGGAGGGAATTCCCCCTGACCAAC 84930 Query 178042 AACGACTTATCTTCGCCGG 178060 | | | ||||||||||| Sbjct 84931 AGAGGTTGATCTTCGCCGG 84949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203392222146926