Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priapulus_20caudatus_20[refseq_20GCF_5F000485595.1_202015-11-19] 59,587 sequences; 511,738,253 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq117 194 1e-44 seq1300 120 3e-22 seq24 84.2 2e-11 >seq117 Length=549210 Score = 194 bits (214), Expect = 1e-44 Identities = 682/1052 (65%), Gaps = 30/1052 (3%) Strand=Plus/Plus Query 132903 GCGGCGGGTTTTGTGCGCAAATAATACATGCCCGTTTTCAGTTTTTTCTCCCACGCGTAA 132962 ||||||| |||||||||| || |||||||| || |||| |||| ||||||||| Sbjct 312251 GCGGCGGCCTTTGTGCGCAGGTAGTACATGCCGGTCTTCACGCCCTTCTTCCACGCGTAG 312310 Query 132963 AAGTGTATGCTCGACACCACCGAGTAAGTGGGTTCGGCGACAAATAAATTCAGCGATTGA 133022 ||||| ||||| | | | | |||| | || ||||||| | |||||| || ||| Sbjct 312311 AAGTGCATGCTGGTAAGCTTGGCGTAATTCGGCTCGGCGAGGTGAATATTCAGTGACTGA 312370 Query 133023 CTCTGATCTATGAAAGGAGCACGGTCGGCGGCCATGTTTATTATACACTTTGATTTGATC 133082 ||||| || ||||| | | || ||||| |||||||| ||||| ||| |||| Sbjct 312371 CTCTGGTCGATGAAGGCGCCGCGATCGGCAGCCATGTTGATTATCGTCTTCTGCGAGATC 312430 Query 133083 TCCCATGCCGTCTTGAAGAGATTCTTGACATGCTGTGGTATTTCGTCAATGTTCTGCACG 133142 ||||| | |||||| |||| | ||| | | | || || || || | |||||| ||| Sbjct 312431 TCCCAGACGGTCTTGTAGAGCTGCTTCAGGTCGTCCGGGATCTCCTCGACGTTCTGAACG 312490 Query 133143 GACCCGTTTTCGGCCAAAATCTTGTTGCGCAATTCCGGAGTGTAA-ATGTCGAGATCGAT 133201 || ||||| ||||| | || ||| || | | || | | | || ||| | Sbjct 312491 GAGCCGTTCTCGGCGATGATGCGGTTCTTCATGTG-GTCGTCCCACAGGCCGCACTCGGT 312549 Query 133202 TAGCGCTTTGACGAGATACTGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCT-GA 133260 || | || | || | |||||||| | || |||||||||| ||| ||||| | || Sbjct 312550 GAGGTCCTTCAGCAGGTGGTGGTTGACGATCTGGAACTCGCCGGAGAGCACGCGCCGCGA 312609 Query 133261 GATATACATTCGACGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCG 133320 | || | || |||| ||| |||| || || ||||||||||| ||||| ||||||| Sbjct 312610 G-TAGATGTTGCTCGTGTACGCCTCGATCGACTCATTGTTGCCGAGGATCTGTGCCGTCG 312668 Query 133321 TCGCCGTGGGCATGTACGCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGC 133380 ||| || ||||| ||| | || || ||| | ||||||| | || || Sbjct 312669 ACGCGGTCGGCATCGGCGCGAGCAGCAGGCTGTTGCGGACGCCGTGAGCGGCGATCTTCG 312728 Query 133381 ACTGCAATTCGTTCCAGTCCCACAGATTGTTGGAATGATAGACGCCGTTCTCGTCGTCGT 133440 || | || |||||||||| || | | ||| | | ||||| | ||||| Sbjct 312729 CCTTGAGCGCGCTCCAGTCCCAGAGGTCGGTGGG--GGTC-ACGCCCCACATGTCGT--- 312782 Query 133441 AGTTGTGAAAATGCAAAATACCCCTGCTCACCGGACTGTCCGTGTACGATTCATAGGGTC 133500 | |||| | ||| |||| || || | | | | ||||| || ||||| | Sbjct 312783 ---------ACTGCAGGACGCCCTTGCTGACGGGGCAGCCGGCGTACGTCTCGTAGGGGC 312833 Query 133501 CGTTGATTTTGGCCAGCTCGCAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGA 133560 | | | || ||||||||||| ||||||| ||| | |||| || | || | Sbjct 312834 CAAGCTTCTCCGCGAGCTCGCAGCTCGCCTCCAGCGCGCCGTAGTATATCGACTCGAATA 312893 Query 133561 TTGAATAGTTGACGAACCTGGCATCGTCGCTATCGTAGGCGATGTCGAGAAGAACAAACG 133620 | | ||||| | | ||| | ||||| ||| | | | | | || | |||| Sbjct 312894 TCTGCTTGTTGAGCAGCTGGGCTTGCTCGCTCTCGAACGGCAAGCGCATGAGGATGAACG 312953 Query 133621 CGTCGGCCAAACCCTGTATGCCGACGCCGATGGGTCGATGTTTTTTATT-GCTC--CTCT 133677 ||||||| | |||||| | ||||| |||||| || || || | || | || | | Sbjct 312954 CGTCGGCGAGACCCTGAACGCCGATGCCGATCGGACGGTGGCGCATGTTCGATCGGCGCG 313013 Query 133678 CCGACTCGGCCGTGGGATAGTGGTTGACGTCGATGATCTTGTTGAGATTGCGGACGATAA 133737 || ||| ||| | ||| ||||| |||||||||||||||||| ||||| ||| | Sbjct 313014 CCTCCTCAACCGGG---TAGAAGTTGATGTCGATGATCTTGTTGAGGTTGCGCGTGATGA 313070 Query 133738 TTTTAGTCAAATGTTTCAGCAAAACATAGTCAAATGTCTTGGCGTCGACGTCGACGCACT 133797 || |||| | |||||| |||| | |||||| | || || ||| || Sbjct 313071 CCTTCGTCACGTCCTTCAGCTTGCGGAAGTCGTACGTCTTGTCCGCG-CGC--ACGTACA 313127 Query 133798 TGTTGACGGCAATACTGGCTAGATTACAAACGGCCGTCTCGTTCT-CGTCGCAATACTGG 133856 |||||| || | ||| || || || ||||||||||| | || || | |||| | Sbjct 313128 TGTTGAGCGCGACCGAGGCGAGGTTGCAGACGGCCGTCTCATCGGGCGACG-AGTACTCG 313186 Query 133857 ACGATCTCGGCGCAGAGGTTGCTGCATTTGATGGTGCCCAAAtttttttGATTGCTAAAG 133916 ||||| || | ||| ||||||||||| || |||||||| | || | || || | Sbjct 313187 ACGATTTCCGTGCACAGGTTGCTGCACTTAATGGTGCCGAGGTTCTGCTGGTTCGACTTG 313246 Query 133917 TTATTGCAATGATCCTTGTATAGCATGTACGG 133948 |||||| |||||||| |||||||| || Sbjct 313247 CGATTGCACGCGTCCTTGTAGAGCATGTAGGG 313278 >seq1300 Length=83366 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | | || |||| ||| | |||||||| || || |||||||| ||| | Sbjct 7890 CCTCCACGCAGACGCAGAACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAC 7831 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | |||||| ||| || ||||| ||||| ||| |||| || ||||| ||||| || || Sbjct 7830 AGAGTGCGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGGCGCTGTTGATCCGGGGGG 7771 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGAC 118690 || ||||||||||| ||||| || || | ||| | | |||| | ||| ||| || Sbjct 7770 ATTCCCTCCTTGTCCTGGATTTTGGCCTTCACGTTTTCAATGCTGTCAGATGC-CTCTAC 7712 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||| | || || || ||||| || |||||||| |||||||| Sbjct 7711 TTCCAAGGTGATGGTCTTACCAGTCAGGGTCTTTACAAAGATCTGCAT 7664 Score = 113 bits (124), Expect = 4e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | |||||||| || || |||||||| ||| || |||||| ||| || Sbjct 8100 ACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCTTCC 8041 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||||||||| ||| |||| || ||||| ||||| || || || ||||||||||| Sbjct 8040 AGCTGTTTTCCGGCGAAGATCAGGCGCTGTTGATCCGGGGGGATTCCCTCCTTGTCCTGG 7981 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| || || | ||| | | ||| | ||| ||| || || | ||| | || || Sbjct 7980 ATTTTGGCCTTCACGTTTTCAATGCAGTCAGATGC-CTCTACTTCTAAGGTGATGGTCTT 7922 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 ||| ||||| || || || || || |||||| || Sbjct 7921 GCCAGTCAGGGTCTTGACGAAGATTTGCATGCCT 7888 >seq24 Length=941673 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 |||||| | | |||| ||||||||| | || ||||| ||||| || |||||||| Sbjct 528622 ACCTCCCCTGAGCCTCAGCACCAAGTGAAGAGTGGACTCCTTTTGGATATTGTAATCCGA 528681 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | |||||| |||||| |||||||| || || | || || ||||||||||| ||||| Sbjct 528682 AAGAGTGCGTCCATCCTCCAGCTGTTTCCCGGCAAATATCAGCCGCTGCTGATCCGGAGG 528741 Query 118631 TATGCC 118636 || || Sbjct 528742 AATTCC 528747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433515345178204