Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priapulus_20caudatus_20[refseq_20GCF_5F000485595.1_202015-11-19] 59,587 sequences; 511,738,253 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq7865 127 1e-24 seq1300 102 5e-17 >seq7865 Length=4356 Score = 127 bits (140), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || ||||| | ||| |||||||| | ||| || ||||| ||||||||||| Sbjct 3365 TCCACCACGCAGACGCAGGACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCACT 3424 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 ||| || | || |||| ||||||||| || || || | || |||||| || ||| Sbjct 3425 CAGAGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCCGGGGG 3484 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||| ||||| ||||| ||| | || | |||||||| | | ||||| Sbjct 3485 GATGCCCTCTTTGTCTTGGATCTTGGCCTTCACATTTTCAATCGAATCACTTGCCTCGAC 3544 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||||||||| |||||||| |||||||||||||||||||| Sbjct 3545 CTCAAGGGTGATGGTTTTACCGGTGAGGGTTTTCACAAAGATCTGCAT 3592 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||| || ||||| | ||| || ||||| ||||||||||| | Sbjct 3594 CCACCACGCAGACGCAGGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCACTC 3653 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||| ||||||||| || || || | || |||||| || ||| Sbjct 3654 AGAGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCTGGGGGG 3713 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||| ||||| ||||| ||| | || | || |||||| | | || || Sbjct 3714 ATGCCCTCTTTGTCTTGGATCTTGGCCTTCACATTTTCGATTGAATCGCTTGCCTCTACC 3773 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||||||||| |||||||| |||||||||||||||||||| Sbjct 3774 TCAAGGGTGATGGTTTTACCGGTGAGGGTTTTCACAAAGATCTGCAT 3820 >seq1300 Length=83366 Score = 102 bits (112), Expect = 5e-17 Identities = 165/233 (71%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||| |||||||| | |||| || ||||| ||||||||||||||| Sbjct 7890 CCTCCACGCAGACGCAGAACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAC 7831 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| |||||| || ||||| || || ||||| || || ||| Sbjct 7830 AGAGTGCGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGGCGCTGTTGATCCGGGGGG 7771 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTC-GAT--- 34336 | | ||||||||| || ||||| ||| | | | || | | ||| ||| Sbjct 7770 ATTCCCTCCTTGTC--CTGGATTTTGGCCTTCA----CGTTTTCAATGCTGTCAGATGCC 7717 Query 34337 TCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || |||| |||||||| || || || || || || |||||||||||||| Sbjct 7716 TCTACTTCCAAGGTGATGGTCTTACCAGTCAGGGTCTTTACAAAGATCTGCAT 7664 Score = 86.0 bits (94), Expect = 4e-12 Identities = 149/215 (69%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||| |||||||| | |||| || ||||| ||||||||||||||||| ||| | || Sbjct 8104 CAGAACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATC 8045 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| ||| || || ||||| || || ||||| || || ||| | | ||||||||| Sbjct 8044 TTCCAGCTGTTTTCCGGCGAAGATCAGGCGCTGTTGATCCGGGGGGATTCCCTCCTTGTC 7985 Query 34297 GGCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATG 34354 || ||||| ||| | | | || | || | | || || || | |||||| Sbjct 7984 --CTGGATTTTGGCCTTCACGTTTTCAATGCAGTCAGATGCCTCTACTTCTAAGGTGATG 7927 Query 34355 GTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || ||||| || || || || || ||||| ||||| Sbjct 7926 GTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 7892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322837379762720