Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priapulus_20caudatus_20[refseq_20GCF_5F000485595.1_202015-11-19] 59,587 sequences; 511,738,253 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq117 158 2e-33 seq459 125 1e-23 seq99 104 3e-17 >seq117 Length=549210 Score = 158 bits (174), Expect = 2e-33 Identities = 342/499 (69%), Gaps = 26/499 (5%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||||||||| || || || ||||| | || | ||| | || || |||||||||||| Sbjct 313623 CAGGGCGGCAACAAGCGTCCGGGCGCCTTTGCGATGTACCTCGAGCCGTGGCACGCGGAC 313564 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAA-AACTCTGGCTTTGAAG-AGGCAC---GAGCCA 96990 | || || ||| |||| ||| || ||| | || |||| ||| || |||| | Sbjct 313563 ATCTTCGAGTTTCTCGAC-TGCAAGAAGAACACCGG----GAAGGAGGAACAGCGAGCGA 313509 Query 96991 GGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTG 97050 | ||| |||| || | |||||| | || ||| ||||||||| | | ||| | | | Sbjct 313508 GAGACCTGTTCTACGGGCTCTGGATCCCGGATCTGTTCATGACGAGGGTCGAACTCAATC 313449 Query 97051 GCTACTGGAGCCTAATGTGCCCCGACTCGTCA--CCCGGTCT-GTCCGATTGCTGGGGCG 97107 ||||| || ||||| || | || | ||||| || | |||| |||||||||| Sbjct 313448 AGGACTGGTCTCTCATGTGTCCGG---CGGAATGCCCGGGCTTGGCCGACTGCTGGGGCG 313392 Query 97108 AAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCG 97167 | || || || || ||||| ||||| | ||||| | |||||| | | || Sbjct 313391 ACGAATTCGAAGCTCTCTACACCAAGTACGAAAAGCAGGGCAAA---GTGAGAAG-GACG 313336 Query 97168 AT----GCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCG 97223 || |||| | |||||| | |||||| || | ||| || || |||||||| Sbjct 313335 ATCAAAGCACAGCAGCTGTGGTACGCCATCATGGAATCGCAGACGGAAACGGGAACTCCC 313276 Query 97224 TACATTCTCTACAAGGATACCGTG-AATCGCAACAGCAACCAACGCCACTTGGGCACCAT 97282 ||||| ||||||||||| | ||| |||||||| ||||| | || | |||||||| Sbjct 313275 TACATGCTCTACAAGGACGC-GTGCAATCGCAAGTCGAACCAGCAGAACCTCGGCACCAT 313217 Query 97283 CAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGT 97342 ||| || ||| |||||||||||||| || |||||| | || || || |||||||| || Sbjct 313216 TAAGTGCAGCAACCTGTGCACGGAAATCGTCGAGTACTCGTCGCCCGATGAGACGGCCGT 313157 Query 97343 TTGCGTTCTGGCATCGGTC 97361 ||| || || |||||| Sbjct 313156 CTGCAACCTCGCCTCGGTC 313138 Score = 123 bits (136), Expect = 4e-23 Identities = 177/247 (72%), Gaps = 2/247 (1%) Strand=Plus/Minus Query 98016 ATCCCGGAAGAGTTGC-GCAGAATCTACAAGACTGTCTGGGAGATTCCGACCAAGACGCT 98074 |||||||| || || |||| |||||||||| ||||||||||| || |||||| | Sbjct 312471 ATCCCGGACGACCTGAAGCAGC-TCTACAAGACCGTCTGGGAGATCTCGCAGAAGACGAT 312413 Query 98075 GATCGATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTA 98134 ||| | ||||||||||| | || | || ||| ||||||||||| || | ||| | | Sbjct 312412 AATCAACATGGCTGCCGATCGCGGCGCCTTCATCGACCAGAGTCAGTCACTGAATATTCA 312353 Query 98135 CGTTGCCGAGCCCACCTACAGTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGG 98194 | | |||||||| | ||| | || || ||||| ||||| ||||| ||||| Sbjct 312352 CCTCGCCGAGCCGAATTACGCCAAGCTTACCAGCATGCACTTCTACGCGTGGAAGAAGGG 312293 Query 98195 CCTCAAGACGGGCATGTACTATCTGAGAACAAAGTCGGCCACCAATGCCATACCATTTAC 98254 | | ||||| ||||||||||| ||| | |||||| | ||| | | || || || || Sbjct 312292 CGTGAAGACCGGCATGTACTACCTGCGCACAAAGGCCGCCGCGAGCGCGATCAAGTTCAC 312233 Query 98255 GGTGGAC 98261 ||||||| Sbjct 312232 GGTGGAC 312226 >seq459 Length=230215 Score = 125 bits (138), Expect = 1e-23 Identities = 324/490 (66%), Gaps = 8/490 (2%) Strand=Plus/Plus Query 70064 GAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTA 70123 ||||| ||||| ||||| || || || || |||||| | |||| || || |||| Sbjct 31656 GAGGGTGATCTCGGGCCGGTCTATGGCTTTCAGTGGCGTCACTTTGGTGCCGAGTACAAG 31715 Query 70124 GACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAA--TCATTGACA 70181 || | | || || || || ||||| ||||| || | | ||| ||||| ||| Sbjct 31716 GATATGTACGCGGATTACTCCGGCCAGGGCGTTGACCAGCTC--GCCAAGGTCATTCACA 31773 Query 70182 CTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATT 70241 | | ||||||||||| || |||| ||| | ||| || | ||||| || | ||| Sbjct 31774 CGATTAAGACCAATCCCGACGACCGGAGAATCATTATGAGCGCGTGGAACCCACCTGATC 31833 Query 70242 TGCACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTACGATGGCA 70301 | | | ||||| || || || || ||| || | ||| |||||| | | | || Sbjct 31834 TCCCAAAGATGGCGCTGCCGCCATGCCACGCGTTTGTTCAATTTTACGTATGCAACGGGG 31893 Query 70302 AATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACA 70361 | |||| ||| | |||||| | ||| ||||| || | || || || || |||| Sbjct 31894 AGCTGTCCTGCCAGCTTTATCAGCGATCTGCAGACATAGGTTTGGGCGTGCCTTTCAACA 31953 Query 70362 TTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACG 70421 | || ||||| | | | ||| ||||| | || ||| | || ||||||| | || | Sbjct 31954 TCGCCAGCTACGCGCTTCTAACGTACATGGTAGCGCACGTGACAGGCCTGAGACCGGGGG 32013 Query 70422 AGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAAGG 70481 | ||||| ||||| || |||||||| ||||| || |||| ||||| || || | |||| Sbjct 32014 ATTTCGTGCACACGATGGGCGACGCGCACGTCTACGTAAACCACATAGATCCTCTCAAGG 32073 Query 70482 TGCAACT--CGAACGGGAGCCGAGACCTTTTCCCAAGCTGGAGTTTGCTCGTAAAGTTGA 70539 ||| || ||| | |||||| | ||||| ||| || | || | || || || Sbjct 32074 AGCAGCTGACGA--GAGAGCCGCGCGAATTTCCAAAGTTGTACTTCAAGAGGAAGGTCGA 32131 Query 70540 AAATATTGAC 70549 ||| |||||| Sbjct 32132 AAACATTGAC 32141 >seq99 Length=602874 Score = 104 bits (114), Expect = 3e-17 Identities = 147/206 (71%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 124984 GTAGATTTACCCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTC 125043 |||| ||| || || ||||||| |||||||||||| ||| |||||||||| || || Sbjct 458991 GTAGGTTTGTACTTTTCCCCATCAAGTATCATGACATCTGGCAAATGTACAAGAAAGCAG 458932 Query 125044 AGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGA 125103 |||| ||||||||||| || |||||||| || || ||| || || |||||||| | Sbjct 458931 AGGCATCCTTTTGGACAGTGGAAGAGGTAGACCTCAGCAAAGATTTGACTGATTGGGACA 458872 Query 125104 CTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCT 125163 | ||| || |||| | | || ||||| ||| | ||||| || || || | Sbjct 458871 AACTGAAGACCGA---GGAGCAACACTTCATATCACACGTGTTGGCGTTTTTCGCTGCAA 458815 Query 125164 CCGATGGAATCGTCAACGACAATCTG 125189 |||||||| || || || |||||| Sbjct 458814 GTGATGGAATTGTGAATGAAAATCTG 458789 Score = 86.0 bits (94), Expect = 9e-12 Identities = 77/94 (82%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 125778 AAGATTTACAACGCCAAGAATCCCTTTGATTTCATG-ACCAGCATATCACTAGAGGGTAA 125836 ||| | ||||||||| ||||||| || ||||||||| | || |||||| | || || || Sbjct 457157 AAGTTCTACAACGCCGAGAATCCGTTCGATTTCATGGAGCA-CATATCCTTGGAAGGAAA 457099 Query 125837 GACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 |||||||||||| ||||||| ||| |||||||| Sbjct 457098 GACCAACTTTTTTGAGAAGAGGGTTGGCGAGTAC 457065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740507231318120