Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priapulus_20caudatus_20[refseq_20GCF_5F000485595.1_202015-11-19] 59,587 sequences; 511,738,253 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1300 123 6e-23 seq7865 105 2e-17 seq412 105 2e-17 seq42372 100 7e-16 seq24 98.7 2e-15 >seq1300 Length=83366 Score = 123 bits (136), Expect = 6e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||| || || ||||| || ||||| | || ||||| || || ||||| Sbjct 7860 GTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCTTCCAGCTGCTTTCCG 7801 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||||||||| || || ||||| || || ||||| || || || || Sbjct 7800 GCGAAGATCAGGCGCTGTTGATCCGGGGGGATTCCCTCCTTGTCCTGGATTTTGGCCTTC 7741 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || ||||| | | | || | ||||| || | || || ||||||||||| || || Sbjct 7740 ACGTTTTCAATGCTGTCAGATGCCTCTACTTCCAAGGTGATGGTCTTACCAGTCAGGGTC 7681 Query 104543 TTTACAAATATCTGCATTTTG 104563 |||||||| |||||||| ||| Sbjct 7680 TTTACAAAGATCTGCATATTG 7660 >seq7865 Length=4356 Score = 105 bits (116), Expect = 2e-17 Identities = 153/212 (72%), Gaps = 12/212 (6%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||| || || |||||| ||||| | ||| ||||| || || || ||| Sbjct 3852 GTAGACTCCTTCTGGATGTTGTAGTCACTCAGAGTGCGACCATCTTCCAGCTGCTTGCCA 3911 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAA--------TCT 104474 ||||| || | |||||| ||||| || || || || ||||| ||||| | ||| Sbjct 3912 GCAAAGATCAACCTCTGCTGATCCGGGGGGATGCCCTCTTTGTCCTGGAGTCTGGCATCT 3971 Query 104475 TTGCTTTT-ACATTTT-CTACGGTATCGCTAGGTTCTACCTCTAGTGTAATA-GTCTTAC 104531 | || || ||||||| | | | ||| || | ||||||| || || ||| ||||||| Sbjct 3972 TGGCCTTCCACATTTTACGATAGGATCACTTGCCTCTACCTA-AGGGTGATAAGTCTTAC 4030 Query 104532 CAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 |||| |||| ||||||||||||||||| Sbjct 4031 CAGTGCAGGTTTCAGCAAATATCTGCATTTTG 4062 >seq412 Length=254572 Score = 105 bits (116), Expect = 2e-17 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 104447 GGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT 104506 || || ||||| ||||| || || ||||| || || |||||||| | | ||| || | Sbjct 122508 GGGGGGATTCCCTCTTTGTCTTGGATCTTGGCCTTCACATTTTCGATAGAATCACTTGCC 122567 Query 104507 TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 |||||||| || || |||||||||||||| || ||||| ||||||||||||||||| Sbjct 122568 TCTACCTCAAGGGTGATAGTCTTACCAGTGAGGGTTTTCACAAATATCTGCATTTT 122623 >seq42372 Length=284 Score = 100 bits (110), Expect = 7e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 ||||| ||||| || || ||||| || || |||||||| | | ||| || | |||||| Sbjct 2 ATTCCCTCTTTGTCTTGGATCTTGGCCTTCACATTTTCGATAGAATCACTTGCCTCTACC 61 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || || || |||||||||||||| || ||||| || |||||||||||||| Sbjct 62 TCAAGGGTGATAGTCTTACCAGTGAGGGTTTTCACGAATATCTGCATTTT 111 >seq24 Length=941673 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 ||||| ||||| ||||||||||| ||||||||||| | | || || ||||| ||||| Sbjct 529493 CCTTCCTTATCTTGAATCTTTGCCTTTACATTTTCAATGCAGTCACTGGGTTCAACCTCA 529552 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || ||||| |||||||| || || ||||| |||||||| Sbjct 529553 AGGGTGATGGTCTTTCCAGTAAGAGTCTTCACAAAGATCTGCAT 529596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150519355176596