Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priapulus_20caudatus_20[refseq_20GCF_5F000485595.1_202015-11-19] 59,587 sequences; 511,738,253 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq7865 125 6e-24 seq1300 109 5e-19 >seq7865 Length=4356 Score = 125 bits (138), Expect = 6e-24 Identities = 174/241 (72%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 94770 AATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGT 94829 ||||||| ||| || | || |||| |||| ||| | ||||| ||||| || | || Sbjct 3355 AATTTTAGTTTCCACCACGCAGACGCAGGACCAGGTGAAGGGTAGACTCCTTCTGGATGT 3414 Query 94830 TATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCT 94889 | || || |||| |||| ||| |||||||| || || ||||||| || || |||| Sbjct 3415 TGTAGTCACTCAGAGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCT 3474 Query 94890 GATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAG 94949 |||| || || || || |||||||| | || || ||||| || | | | ||| Sbjct 3475 GATCCGGGGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTCACATTTTCAATCGAATCA- 3533 Query 94950 CGTGG-TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | || ||||| |||| ||||||||||| || || || ||||||||||||||||||||| Sbjct 3534 CTTGCCTCGACCTCAAGGGTGATGGTTTTACCGGTGAGGGTTTTCACAAAGATCTGCATG 3593 Query 95009 C 95009 | Sbjct 3594 C 3594 Score = 120 bits (132), Expect = 3e-22 Identities = 159/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| || | ||| | ||||| ||||| || | ||| || || |||| |||| | Sbjct 3606 CGCAGGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCACTCAGAGTGCGACCA 3665 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||||||| || || ||||||| || || ||||||||||| || || || |||||| Sbjct 3666 TCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCTGGGGGGATGCCCTCTTTG 3725 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG-GTCGACGTCAATCGTGAT 94971 || | || || ||||| || ||| | || || || || || |||| ||||| Sbjct 3726 TCTTGGATCTTGGCCTTCACATTTTCGATTGAATC-GCTTGCCTCTACCTCAAGGGTGAT 3784 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 |||||| || || || |||||||||||||||||||||| Sbjct 3785 GGTTTTACCGGTGAGGGTTTTCACAAAGATCTGCATGC 3822 >seq1300 Length=83366 Score = 109 bits (120), Expect = 5e-19 Identities = 165/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||||| | || |||| |||| ||| | |||||| ||||| || | ||| | Sbjct 7898 TTTGCATGCCTCCACGCAGACGCAGAACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGT 7839 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | ||| || |||| | ||| |||||||| |||||| | ||||| | | || |||| Sbjct 7838 AGTCGGACAGAGTGCGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGGCGCTGTTGAT 7779 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | || || || || || ||||| | ||||| ||||| ||| | | |||||| Sbjct 7778 CCGGGGGGATTCCCTCCTTGTCCTGGATTTTGGCCTTCACGTTTTCAATGCTGTCAGATG 7719 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || | |||||||| || ||||| || || || |||||||||||||| Sbjct 7718 CCTCTACTTCCAAGGTGATGGTCTTACCAGTCAGGGTCTTTACAAAGATCTGCAT 7664 Score = 98.7 bits (108), Expect = 9e-16 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| |||| ||| | |||||| ||||| || | ||| || ||| || |||| | | Sbjct 8106 CGCAGAACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCA 8047 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || ||||||||||||||| | ||||| | | || ||||| || || || || || ||| Sbjct 8046 TCTTCCAGCTGTTTTCCGGCGAAGATCAGGCGCTGTTGATCCGGGGGGATTCCCTCCTTG 7987 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||| ||||| ||| | | ||||| || || || | |||||| Sbjct 7986 TCCTGGATTTTGGCCTTCACGTTTTCAATGCAGTCAGATGCCTCTACTTCTAAGGTGATG 7927 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || ||||| || || || || ||||| ||||||| Sbjct 7926 GTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCATGC 7890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447957295903320