Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priapulus_20caudatus_20[refseq_20GCF_5F000485595.1_202015-11-19] 59,587 sequences; 511,738,253 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2129 185 1e-42 seq246 176 7e-40 seq1860 170 3e-38 seq639 158 2e-34 seq69 150 3e-32 seq1768 143 4e-30 seq67 123 4e-24 >seq2129 Length=40537 Score = 185 bits (204), Expect = 1e-42 Identities = 190/246 (77%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||||||||||| | | || || || |||||||| |||||||||||||| || | Sbjct 24225 CGCCAAGCGTCATCGCA-AGGTGTTGCGTGACAACATCCAGGGAATCACCAAGCCTGCAA 24167 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||| ||||| | ||||| || |||||| ||||||| | |||| ||||||| Sbjct 24166 TCCGTCGTCTCGCTCGCAGAGGTGGTGTGAAGCGTATCTCTGGCCTCATCTACGAAGAGA 24107 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| |||| | |||||| ||| ||| |||| |||||| || ||| |||| Sbjct 24106 CCCGCGGTGTCCTGAAAGTGTTCCTCGAGAACGTCATCCGTGATGCCGTCACCTACACCG 24047 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || | ||||| |||||| ||||||| | ||||| || | |||||||| | Sbjct 24046 AGCACGCCAAGAGGAAGACCGTCACCGCCATGGACGTTGTCTACGCTCTCAAACGTCAGG 23987 Query 16671 GCCGTA 16676 | |||| Sbjct 23986 GACGTA 23981 >seq246 Length=352277 Score = 176 bits (194), Expect = 7e-40 Identities = 193/254 (76%), Gaps = 2/254 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||||||||||| | | || || || |||||||| |||||||||||||| || | Sbjct 60908 CGCCAAGCGTCATCGCA-AGGTGTTGCGTGACAACATCCAGGGAATCACCAAGCCTGCCA 60850 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||| ||||| | ||||| || |||||| ||||||| | |||| ||||||| Sbjct 60849 TCCGTCGTCTTGCTCGCAGAGGTGGTGTGAAGCGTATCTCTGGCCTCATCTACGAAGAGA 60790 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || |||| | |||||| ||| ||| |||| |||||| || ||| |||| Sbjct 60789 CCCGCGGCGTCCTGAAAGTGTTCCTCGAGAACGTCATCCGTGATGCCGTCACCTACACCG 60730 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||| || || | ||||| |||||| ||||||| | ||||| || | |||||||| | Sbjct 60729 AGCATGCCAAGAGGAAGACCGTCACCGCCATGGACGTTGTCTACGCTCTCAAACGTCAGG 60670 Query 16671 GCCGTAAGATTTAT 16684 | |||| | | ||| Sbjct 60669 GACGTATGTTATAT 60656 Score = 95.1 bits (104), Expect = 2e-15 Identities = 163/221 (74%), Gaps = 13/221 (6%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAG-CT 16489 ||| |||||||||||| || | | | || || |||| || |||||||||||||| | || Sbjct 52259 CGCCAAGCGTCATCGCAAGGTGT-TGCGTGACAACACGCAGGGAATCACCAAGCCTGCCT 52317 Query 16490 ATCCGT-CGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGT-CTATGAAG 16547 |||||| ||||| ||||| || ||||| | ||||| ||||||| | | ||| |||| Sbjct 52318 ATCCGTCCGTCTTGCTCGCCGAGGTGGTGCTGAGCGTATCTCTGGCCTCATCCTACGAAG 52377 Query 16548 AGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTT--ATCCATGA-TGCTTTCCACT 16604 ||| || || ||||| | |||||| || |||| |||| ||| ||| || ||| Sbjct 52378 AGA-CCGGCGCGTCCTGAAG-TGTTCCTC-GGAACGTTCCATCCGTGATTGCGTT-CACC 52433 Query 16605 ATAC-CGAGCACGCTAAACGTAAGACTGTCACCTCCATGGA 16644 ||| ||||||||| || | | || |||||| ||||||| Sbjct 52434 TTACACGAGCACGCCAAGAGAAGCACCGTCACCGCCATGGA 52474 >seq1860 Length=50733 Score = 170 bits (188), Expect = 3e-38 Identities = 183/242 (76%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| | | || || |||||||| ||||| ||||||||||||||| Sbjct 49349 GCAAAGCGTCATCGCAAAGTGTTGCGTGACAACATCCAGGGAATTACCAAGCCAGCTATC 49290 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| ||||| || ||||| || |||||| ||||||| | |||| ||||| | Sbjct 49289 CGTCGTCTTGCTCGCCGAGGTGGCGTGAAGCGTATCTCTGGCCTCATCTACGAAGAAACC 49230 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || |||||| |||||||| ||| ||| |||| |||||| || ||| || ||| Sbjct 49229 CGCGGAGTCTTGAAGGTCTTCCTCGAGAACGTCATCCGTGATGCCGTCACCTACACTGAG 49170 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||| || || ||||||| | || || || |||| || || || Sbjct 49169 CACGCCAAGAGAAAGACCGTAACAGCCATGGACGTTGTTTACGCTCTGAAGCGGCAGGGA 49110 Query 16673 CG 16674 || Sbjct 49109 CG 49108 >seq639 Length=180304 Score = 158 bits (174), Expect = 2e-34 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 16478 ACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTG 16537 |||||||| || || |||||||| ||||| || ||||| || |||||| ||||||| | Sbjct 89501 ACCAAGCCTGCCATTCGTCGTCTTGCTCGCCGAGGTGGTGTGAAGCGTATCTCTGGCCTT 89442 Query 16538 GTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCT 16597 |||| ||||||| | | ||| |||| | |||||| ||| |||||||| ||||||| Sbjct 89441 CTCTACGAAGAGACCTGCGGCGTTCTGAAAGTGTTCCTCGAGAACGTTATCCGTGATGCT 89382 Query 16598 TTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCA 16657 || ||| ||||||||||| || | ||||| |||||| ||||||| | ||||| || Sbjct 89381 GTCACCTACACCGAGCACGCCAAGAGGAAGACCGTCACCGCCATGGACGTTGTCTACGCT 89322 Query 16658 TTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | |||||||| || |||| | || || ||||| ||||| Sbjct 89321 CTCAAACGTCAGGGGCGTACTCTGTACGGCTTTGGCGGTTAA 89280 >seq69 Length=675951 Score = 150 bits (166), Expect = 3e-32 Identities = 158/205 (77%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||||||| || | | | || || |||||||| |||||||||||||| || | Sbjct 195514 CGCCAAGCGTCATCGCAAGGTGT-TGCGTGACAACATCCAGGGAATCACCAAGCCTGCCA 195572 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||| ||||| || ||||| || |||||| ||||||| | |||| ||||||| Sbjct 195573 TCCGTCGTCTTGCTCGCCGAGGTGGTGTGAAGCGTATCTCTGGCCTCATCTACGAAGAGA 195632 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || |||| | |||||| ||| ||| |||| |||||| || ||| |||| Sbjct 195633 CCCGCGGCGTCCTGAAAGTGTTCCTCGAGAACGTCATCCGTGATGCCGTCACCTACACCG 195692 Query 16611 AGCACGCTAAACGTAAGACTGTCAC 16635 |||| || || | ||||| ||||| Sbjct 195693 AGCATGCCAAGAGGAAGACCGTCAC 195717 >seq1768 Length=54638 Score = 143 bits (158), Expect = 4e-30 Identities = 172/226 (76%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||||||| || | | | || || |||||||| |||||||||||||| |||| Sbjct 8445 CGCCAAGCGTCATCGCAAGGTGT-TGCGTGACAACATCCAGGGAATCACCAAGCCTGCTA 8503 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||| ||||| || ||||| || |||||| ||||||| | |||| ||||||| Sbjct 8504 TCCGTCGTCTTGCTCGCCGAGGTGGTGTGAAGCGTATCTCTGGCCTCATCTACGAAGAGA 8563 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| || |||| | |||||| ||| ||| |||| | |||| || ||| |||| Sbjct 8564 CCCGTGGCGTCCTGAAAGTGTTCCTCGAGAACGTCATCCGT-ATGCCGTCAGCTACACCG 8622 Query 16611 AG-CACGCTAA-ACGTAAGAC-TGTCACCTCCATGGATATCGTCTA 16653 || ||||| || | ||||| | ||| ||||||| | ||||| Sbjct 8623 AGACACGCCAAGAGAGAAGACGCATAACCGCCATGGACGTTGTCTA 8668 Score = 116 bits (128), Expect = 6e-22 Identities = 179/245 (73%), Gaps = 13/245 (5%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGA-ATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTC-GTGGTG 16514 || || |||||| |||| ||||||||||| |||||| ||||| ||||| | | |||| Sbjct 2686 CGTGACAACATC--AGGACATCACCAAGCCTGCTATCG--CGTCTTGCTCGCCCGAGGTG 2741 Query 16515 GA-GTCAAGCGTGTCTCTGGATTG-GTCTATGAAGAGATTCGTGATGTTTTGAA-GATCT 16571 | || |||||| ||||||| | ||||| ||||||| |||| || |||| | | Sbjct 2742 GTTGTGAAGCGTATCTCTGGCCTCAGTCTACGAAGAGACCCGTGGCGTCCTGAAAGTTGG 2801 Query 16572 TCCTCAAGACCGTT--ATCCAT--GATGCTTTCCACTATACCGAGCACGCTAAACGTAAG 16627 ||||| ||| || | |||| | ||||| || ||| ||||||||||| || | ||| Sbjct 2802 TCCTCGAGAACGGTTCATCCGTTAGATGCCGTCACCTACACCGAGCACGCCAAGAGGAAG 2861 Query 16628 ACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGT 16687 || |||||| ||||||| | ||||| || | |||||||| || |||| | || || Sbjct 2862 ACCGTCACCGCCATGGACGTTGTCTACGCTCTCAAACGTCAGGGACGTACACTGTACGGC 2921 Query 16688 TTTGG 16692 ||||| Sbjct 2922 TTTGG 2926 >seq67 Length=683652 Score = 123 bits (136), Expect = 4e-24 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||||||| || || |||||||||||||| ||||| ||||| || || Sbjct 670900 CGCTAAGCGTCATCGCAAGGTACTCCGCGATAACATCCAAGGCATCACGAAGCCTGCCAT 670959 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| ||||| || ||||| || |||||| ||||||| | |||||||||| | Sbjct 670960 CCGCCGTCTTGCTCGCCGAGGTGGTGTGAAGCGTATCTCTGGCCTCATCTATGAAGAAAC 671019 Query 16552 TCGTGATGTTTTGAAG 16567 ||||| ||| || ||| Sbjct 671020 TCGTGGTGTGTTAAAG 671035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79020719188791