Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priapulus_20caudatus_20[refseq_20GCF_5F000485595.1_202015-11-19] 59,587 sequences; 511,738,253 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1300 107 1e-18 seq24 86.0 4e-12 seq7865 84.2 1e-11 >seq1300 Length=83366 Score = 107 bits (118), Expect = 1e-18 Identities = 170/240 (71%), Gaps = 3/240 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| |||| || ||||| |||||| || ||||| || || || || || || Sbjct 7881 AGACGCAGAACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGG 7822 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| || || || ||||| || || | |||||||| ||||| || | ||||||| Sbjct 7821 CCATCTTCCAGCTGCTTTCCGGCGAAGATCAGGCGCTGTTGATCCGGGGGGATTCCCTCC 7762 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| ||| | || ||| | ||| |||| ||| ||||||| ||| Sbjct 7761 TTGTCCTGGAT-TTTGGCCTTCACGTTTTCAATGCTGTCAGATGCCTCTACTTCCAAGGT 7703 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA-TTGTATGACGTTGAA 34726 || || ||||| || | || || ||||| |||||||| |||| || ||||| | ||| Sbjct 7702 GATGGTCTTACCAGTCAGGGTCTTTACAAAGATCTGCATATTGACCTGCATGACATAGAA 7643 Score = 82.4 bits (90), Expect = 5e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 34491 ACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTC 34550 ||||| |||| || ||||| |||||| || ||||| || || || || || || | Sbjct 8107 ACGCAGAACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCC 8048 Query 34551 GTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTT 34610 ||||| || ||||| ||||| || || | |||||||| ||||| || | ||||||||| Sbjct 8047 ATCTTCCAGCTGTTTTCCGGCGAAGATCAGGCGCTGTTGATCCGGGGGGATTCCCTCCTT 7988 Query 34611 GTC 34613 ||| Sbjct 7987 GTC 7985 >seq24 Length=941673 Score = 86.0 bits (94), Expect = 4e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || || | || |||||| || |||||| ||||||||| || || ||||| ||| Sbjct 528623 CCTCCCCTGAGCCTCAGCACCAAGTGAAGAGTGGACTCCTTTTGGATATTGTAATCCGAA 528682 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || || ||||| ||||||||||| | ||||| || ||||| || Sbjct 528683 AGAGTGCGTCCATCCTCCAGCTGTTTCCCGGCAAATATCAGCCGCTGCTGATCCGGAGGA 528742 Query 34600 ACTCC 34604 | ||| Sbjct 528743 ATTCC 528747 >seq7865 Length=4356 Score = 84.2 bits (92), Expect = 1e-11 Identities = 152/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| |||| || || || |||||| || ||||| || || || || || Sbjct 3375 AGACGCAGGACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCACTCAGAGTGCGA 3434 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| || || || || ||||| || || | ||| || ||||| || | ||||| Sbjct 3435 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCCGGGGGGATGCCCTCT 3494 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCT-TCGCTCTCCACTTCCACGGT 34667 |||||| |||||| || | | ||| | || | || ||| || || | ||| Sbjct 3495 TTGTCTTGGATCTTGGCCTTCACATTTTCAATCGAATCACTTGC-CTCGACCTCAAGGGT 3553 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || ||||||||||| | ||||||||||| ||||||||| Sbjct 3554 GATGGTTTTACCGGTGAGGGTTTTCACAAAGATCTGCATG 3593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314501038151771