Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priapulus_20caudatus_20[refseq_20GCF_5F000485595.1_202015-11-19] 59,587 sequences; 511,738,253 total letters Query= NC_028997.1 Length=59802 Score E Sequences producing significant alignments: (Bits) Value seq2646 156 2e-33 seq5218 82.4 3e-11 >seq2646 Length=27379 Score = 156 bits (172), Expect = 2e-33 Identities = 248/353 (70%), Gaps = 6/353 (2%) Strand=Plus/Minus Query 614 ATCCTTTATCATGGTACTCGTGGTCCTGGAAAGACTGATGCGCAGTTGATGCGTTTTCGT 673 || |||||| | || ||| | || || || ||||| || || || | ||| |||||| Sbjct 18253 ATTCTTTATGAAGGGACTAGGGGGCCGGGGAAGACCGACGCTCAAGTAATGTACTTTCGT 18194 Query 674 CGCTATGTTGGCATGGGGTACGGGAAACACTGGCGCGGTATCATTTTTGACCGAGAATAC 733 |||| |||||| | || ||||| | ||||||||| | |||||||| | || || Sbjct 18193 CGCTTTGTTGGTCTTGGTTACGGACACTTCTGGCGCGGGGTAATTTTTGATCTTGAGTAT 18134 Query 734 AAAAACTTAGATGACTTAGTGGCAAAGTCACAGCGTTGGTTTCCTGAATTTAACGATGGT 793 ||||| | ||||||||| | | || ||| | || ||||| | | | ||||| || || Sbjct 18133 AAAAATCTTGATGACTTAATATCTAAATCAAAACGATGGTTCCGTCAGTTTAATGACGGC 18074 Query 794 TGTAAATTCTTATCTTCCAAGTCAGATTATAAATGGGTATGGCCTAGCGGCGAAGAACTA 853 |||||| || |||| || ||| |||||||| ||||||| || ||||| || Sbjct 18073 GCGAAATTCATAAGTTCCGCATCCCATTTAAAATGGGTTTGGCCTACGGGTGAAGAGCTT 18014 Query 854 ATGTTCCGTGTTGCTAAAAAACCTAAGGA---TTACTGGCTGTACCACGGTCAGGAATTT 910 ||| ||||| | |||||| |||| ||| ||| |||||||| || ||||| Sbjct 18013 TGGTTTCGTGTAA-TGAAAAACG--AGGAAAATTATTGGAACTACCACGGACAAGAATTC 17957 Query 911 CCATTTATTGGATGGAACGAATTAACTAAATATCCTGATAGTGGACTTTATGA 963 || | |||||||||||||||| |||||||| | || || || ||| || || Sbjct 17956 CCCTATATTGGATGGAACGAACTAACTAAACAACCCAATCCTGAACTATACGA 17904 Score = 82.4 bits (90), Expect = 3e-11 Identities = 175/256 (68%), Gaps = 4/256 (2%) Strand=Plus/Minus Query 1361 GCTTGGCTTGGTGGTAGCTGGGATATTACGTCCGGCGGAATGTTCGACGACCTGTGG-CG 1419 |||||||| ||| | |||||||||||| ||| |||||| |||| || ||||| | Sbjct 17557 GCTTGGCTCCATGGAAATTGGGATATTACGAGCGGAGGAATGCTCGATGATGTGTGGTCA 17498 Query 1420 CCAGAATATACATGTGGTCAAGCCATTCCCAATACCTCACTCCTGGAGAATTGACAGATC 1479 | |||| | |||| || | ||| |||| |||| |||| ||| | || Sbjct 17497 GCTCAATACA-ATGTCGTAGAAAATTTCACAATCCCTCCAAGTTGGAAAATGTTTCGTTC 17439 Query 1480 ATTTGACTGGGGCTCAAGTAAGCCTTTCTCAGTTGGATGGTGGGCAAGAAGTGATGGTAG 1539 ||||| |||||||| || || ||||||||||| |||||||| ||| |||||| Sbjct 17438 CTTTGATTGGGGCTCCTCAAAACCCTTCTCAGTTGGTTGGTGGGCGGAAAGCGATGGTTC 17379 Query 1540 TGATATCGTGTATCCGAATGGTC-GTCGTGTACGAACAGTACGAGGTGACTTATTTAGGA 1598 ||| | | | ||||||||| | | | | ||| || ||||||| || ||||| | Sbjct 17378 CGATGTACTTCTTTCGAATGGTCAATGGCGCTC-AACTGTCAGAGGTGATTTGTTTAGAA 17320 Query 1599 TCATGGAGTGGTATGG 1614 | ||||||||||| Sbjct 17319 TTGGTGAGTGGTATGG 17304 >seq5218 Length=8244 Score = 82.4 bits (90), Expect = 3e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 33447 GTATCGCAACCTGGGCATTGCAAGTTGCAACCAGCTAATCGGACAAATACGGCAGGTTGA 33506 ||||| || ||||| ||||| ||||||||||| |||| || | || | ||||||||| Sbjct 7920 GTATCACATCCTGGACATTGTAAGTTGCAACCGCCTAAACGAATGAAAATAGCAGGTTGA 7979 Query 33507 CCACAAAATGGGCCTTCGCCTTGAATGGTATGAAAAAT 33544 |||||| | ||||||||||| || || || |||||| Sbjct 7980 CCACAATAAGGGCCTTCGCCCTGTATTGTGGAAAAAAT 8017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 191109476016216