Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq157111 145 2e-29 seq157110 145 2e-29 seq148981 132 1e-25 seq148980 132 1e-25 seq77062 91.5 3e-13 seq69893 91.5 3e-13 >seq157111 Length=1651 Score = 145 bits (160), Expect = 2e-29 Identities = 264/381 (69%), Gaps = 4/381 (1%) Strand=Plus/Plus Query 61088 TCAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAAGGAC 61147 ||| || || ||| ||| ||||||||||||| ||||||||||| || || |||| ||| Sbjct 509 TCAGGCTTCTACAAGTGAGATGTATGGAAAAGTCCAAGAAATTCCACAGACTGAAAAGAC 568 Query 61148 TCCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTGGATTTGTAA 61207 || |||||||| | || ||||| | || ||| | || |||| ||||||| | Sbjct 569 CCCATTTTATCCCAGGTCTCCTTATGGAGCAGCCAAAGTGTATGCTTTCTGGATTGTTGT 628 Query 61208 AAATTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCGATTTGT-TTCAATCACGAGA 61266 |||||| | || | || ||||||| | || | || | | ||||||||||| | Sbjct 629 AAATTATAGAGAAGCCTACAATATGTTTGCAACCAA-TGGAATCCTGTTCAATCACGAAA 687 Query 61267 GTCCCAATAGAGGTCATCAGTTTGTGACTCGTAAAATTACGAAGGCGGTTGCAAATATT- 61325 |||| ||||||| | ||||| || | || || |||| || || || || ||| Sbjct 688 GTCCACGTAGAGGTGAAACTTTTGTAACAAGGAAGATAACGAGAGCAGTGGCTAAAATTC 747 Query 61326 TTTAACGGTGTCGAAAAATGCATGTATCTAGGAAACATAGACTCTAAAAGAGATTGGGGA 61385 || | | | || | | | || || | || ||||| | ||||| |||||||| |||||| Sbjct 748 ATTTAGGATTTCAAGATAAGCTTG-AACTTGGAAATCTGGACTCCAAAAGAGACTGGGGA 806 Query 61386 TATGCGGAAGATTATATCGAGGCTATGTGGTTGATGTTGCAACAAGATACTCCAGATGAC 61445 |||| ||||||| | ||||| |||||| | || || || || || ||||| ||| Sbjct 807 CATGCCAGAGATTATGTTGAGGCCATGTGGCTTATTTTACAGCATGAACAGCCAGAGGAC 866 Query 61446 TACGTTATTGCGACTGGACAG 61466 | || | || ||||||||| Sbjct 867 TTTGTGGTGGCAACTGGACAG 887 >seq157110 Length=1672 Score = 145 bits (160), Expect = 2e-29 Identities = 264/381 (69%), Gaps = 4/381 (1%) Strand=Plus/Plus Query 61088 TCAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAAGGAC 61147 ||| || || ||| ||| ||||||||||||| ||||||||||| || || |||| ||| Sbjct 509 TCAGGCTTCTACAAGTGAGATGTATGGAAAAGTCCAAGAAATTCCACAGACTGAAAAGAC 568 Query 61148 TCCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTGGATTTGTAA 61207 || |||||||| | || ||||| | || ||| | || |||| ||||||| | Sbjct 569 CCCATTTTATCCCAGGTCTCCTTATGGAGCAGCCAAAGTGTATGCTTTCTGGATTGTTGT 628 Query 61208 AAATTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCGATTTGT-TTCAATCACGAGA 61266 |||||| | || | || ||||||| | || | || | | ||||||||||| | Sbjct 629 AAATTATAGAGAAGCCTACAATATGTTTGCAACCAA-TGGAATCCTGTTCAATCACGAAA 687 Query 61267 GTCCCAATAGAGGTCATCAGTTTGTGACTCGTAAAATTACGAAGGCGGTTGCAAATATT- 61325 |||| ||||||| | ||||| || | || || |||| || || || || ||| Sbjct 688 GTCCACGTAGAGGTGAAACTTTTGTAACAAGGAAGATAACGAGAGCAGTGGCTAAAATTC 747 Query 61326 TTTAACGGTGTCGAAAAATGCATGTATCTAGGAAACATAGACTCTAAAAGAGATTGGGGA 61385 || | | | || | | | || || | || ||||| | ||||| |||||||| |||||| Sbjct 748 ATTTAGGATTTCAAGATAAGCTTG-AACTTGGAAATCTGGACTCCAAAAGAGACTGGGGA 806 Query 61386 TATGCGGAAGATTATATCGAGGCTATGTGGTTGATGTTGCAACAAGATACTCCAGATGAC 61445 |||| ||||||| | ||||| |||||| | || || || || || ||||| ||| Sbjct 807 CATGCCAGAGATTATGTTGAGGCCATGTGGCTTATTTTACAGCATGAACAGCCAGAGGAC 866 Query 61446 TACGTTATTGCGACTGGACAG 61466 | || | || ||||||||| Sbjct 867 TTTGTGGTGGCAACTGGACAG 887 >seq148981 Length=1183 Score = 132 bits (146), Expect = 1e-25 Identities = 249/361 (69%), Gaps = 4/361 (1%) Strand=Plus/Minus Query 61108 TGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAAGGACTCCGTTTTATCCTCGTAGCC 61167 ||||||||||||| || |||||||| || || |||| ||| || |||||||| | | Sbjct 753 TGTATGGAAAAGTCCATGAAATTCCACAGACTGAAAAGACCCCATTTTATCCCAGGTCTC 694 Query 61168 CGTATGGTGTTGCAAAACTATACGCTTACTGGATTTGTAAAAATTACCGCGAGTCGTATG 61227 | ||||| | || ||| | || |||| ||||||| | |||||| | || | || Sbjct 693 CTTATGGAGCAGCCAAAGTGTATGCTTTCTGGATTGTTGTAAATTATAGAGAAGCCTACA 634 Query 61228 GAATGTTTGTATGTAACTCGATTTGT-TTCAATCACGAGAGTCCCAATAGAGGTCATCAG 61286 ||||||| | || | || | | ||||||||||| ||||| ||||||| | Sbjct 633 ATATGTTTGCAACCAA-TGGAATCCTGTTCAATCACGAAAGTCCACGTAGAGGTGAAACT 575 Query 61287 TTTGTGACTCGTAAAATTACGAAGGCGGTTGCAAATATT-TTTAACGGTGTCGAAAAATG 61345 ||||| || | || || |||| || || || || ||| || | | || | | | | Sbjct 574 TTTGTAACAAGGAAGATAACGAGAGCAGTGGCTAAAATTCATTTAGGACTTCAAGATAAG 515 Query 61346 CATGTATCTAGGAAACATAGACTCTAAAAGAGATTGGGGATATGCGGAAGATTATATCGA 61405 | || | || ||||| | ||||| |||||||| |||||| |||| ||||||| | || Sbjct 514 CTTG-AACTTGGAAATCTGGACTCCAAAAGAGACTGGGGACATGCCAGAGATTATGTTGA 456 Query 61406 GGCTATGTGGTTGATGTTGCAACAAGATACTCCAGATGACTACGTTATTGCGACTGGACA 61465 ||| |||||| | || || || || || ||||| |||| || | || |||||||| Sbjct 455 GGCCATGTGGCTTATTTTACAGCATGAACAGCCAGAGGACTTTGTGGTGGCAACTGGACA 396 Query 61466 G 61466 | Sbjct 395 G 395 >seq148980 Length=1560 Score = 132 bits (146), Expect = 1e-25 Identities = 249/361 (69%), Gaps = 4/361 (1%) Strand=Plus/Minus Query 61108 TGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAAGGACTCCGTTTTATCCTCGTAGCC 61167 ||||||||||||| || |||||||| || || |||| ||| || |||||||| | | Sbjct 1130 TGTATGGAAAAGTCCATGAAATTCCACAGACTGAAAAGACCCCATTTTATCCCAGGTCTC 1071 Query 61168 CGTATGGTGTTGCAAAACTATACGCTTACTGGATTTGTAAAAATTACCGCGAGTCGTATG 61227 | ||||| | || ||| | || |||| ||||||| | |||||| | || | || Sbjct 1070 CTTATGGAGCAGCCAAAGTGTATGCTTTCTGGATTGTTGTAAATTATAGAGAAGCCTACA 1011 Query 61228 GAATGTTTGTATGTAACTCGATTTGT-TTCAATCACGAGAGTCCCAATAGAGGTCATCAG 61286 ||||||| | || | || | | ||||||||||| ||||| ||||||| | Sbjct 1010 ATATGTTTGCAACCAA-TGGAATCCTGTTCAATCACGAAAGTCCACGTAGAGGTGAAACT 952 Query 61287 TTTGTGACTCGTAAAATTACGAAGGCGGTTGCAAATATT-TTTAACGGTGTCGAAAAATG 61345 ||||| || | || || |||| || || || || ||| || | | || | | | | Sbjct 951 TTTGTAACAAGGAAGATAACGAGAGCAGTGGCTAAAATTCATTTAGGACTTCAAGATAAG 892 Query 61346 CATGTATCTAGGAAACATAGACTCTAAAAGAGATTGGGGATATGCGGAAGATTATATCGA 61405 | || | || ||||| | ||||| |||||||| |||||| |||| ||||||| | || Sbjct 891 CTTG-AACTTGGAAATCTGGACTCCAAAAGAGACTGGGGACATGCCAGAGATTATGTTGA 833 Query 61406 GGCTATGTGGTTGATGTTGCAACAAGATACTCCAGATGACTACGTTATTGCGACTGGACA 61465 ||| |||||| | || || || || || ||||| |||| || | || |||||||| Sbjct 832 GGCCATGTGGCTTATTTTACAGCATGAACAGCCAGAGGACTTTGTGGTGGCAACTGGACA 773 Query 61466 G 61466 | Sbjct 772 G 772 >seq77062 Length=416 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 200 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 141 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 140 CCCCACGTTGGGC 128 >seq69893 Length=346 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 258 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 317 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 318 CCCCACGTTGGGC 330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1054394617895640