Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq142104 235 6e-57 seq139941 235 6e-57 >seq142104 Length=1514 Score = 235 bits (260), Expect = 6e-57 Identities = 585/882 (66%), Gaps = 16/882 (2%) Strand=Plus/Plus Query 16676 TGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCC 16735 ||||| || | ||| | || || |||||||| || |||||||| | || || |||||| Sbjct 367 TGGTATTCTCCAACTCTCTTCTCAAAAAAGTTTGTCTTGCCCTCCAAGGAAATGTTCTCC 426 Query 16736 ATGAAATCAAAAGGATTAGTAGC--TGAAAATATTTTAGAGTACCCCAGTTCGGCGATTA 16793 ||||| ||||| || || |||| || ||| ||| ||| | || | | | | Sbjct 427 ATGAAGTCAAATGGGTTTTTAGCATTGTAAACCTTT--GAGCAGTTGAGAGCAACCAGAA 484 Query 16794 ATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGAC 16853 ||| || || |||||||| || || || ||| || | |||||| || ||||| Sbjct 485 GTCTGTCAGCAACAAATTCAATGTACTGTTTCATCAAAGTGTGGTTCATGCCGATAAGCT 544 Query 16854 GTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATAC 16913 || ||||| ||||| || | ||| ||| || || ||||| || || | || || Sbjct 545 TAACTGGAAGGGCTTCTGTAAGGAATTCTTGTTCAATGACAACAGCATCTTGGATTATCG 604 Query 16914 TAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAA--ACATCAGACATGCGAA 16971 | || || || ||| | ||| | | || | | |||||| ||| || || Sbjct 605 ATTTTATGACTTTTTCTGATGGTTT--GTTGACCAAGTATGAGAACATCATACAGGCAAA 662 Query 16972 ATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCAT 17031 || ||||| | |||||||| | ||||| || || || || || || | || ||||| Sbjct 663 GTCACAATGAAGACCCTCGTCACGACTGATGAGCTCATTTGAGAAGGTTAGACCTGGCAT 722 Query 17032 CTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTC 17091 ||| || | || |||| ||| || || || || || || ||||| ||||| || || || Sbjct 723 CTTGCCCCTCTTTTTTAGCCAGAAAATGGCAGCAAAAGAACCAGAGAAGAAGATTCCTTC 782 Query 17092 GACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTT----GTTACGAATCC 17147 || | ||||| || | || | || | || | || ||||| ||| |||| Sbjct 783 CACAGCAGCAAAGGCAACTATCCTCTCACCATAAGATGC-TCTTTCTGGGTTG---ATCC 838 Query 17148 ATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATA 17207 | ||| | |||||| |||||| || | | ||| ||| || || ||||| || || | Sbjct 839 AATTCAGGGCCCACTGAGCTTTTCGCATGACACAAGGCATTGTCTCAATGGCATTGAAAA 898 Query 17208 ATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGG 17267 || || |||||| ||| || || || || || | || ||||||||||| | Sbjct 899 GTTGCTGTTTTTCAGCCGAGTCCTCAATGTAAGTTTCAATCAACAGACTGTACATTTCAG 958 Query 17268 AGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAA 17327 |||| || ||||| || ||||| || || || || || |||| || || | | ||| | Sbjct 959 AGTGGATATTCTCTATTGCTATTTGGAAGCCATAGAAACATCTCGCCTCTGGAACTTGGA 1018 Query 17328 CTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAA 17387 ||||| | || | || | | || || ||||| ||||| ||||| || ||||| | Sbjct 1019 CTTCCTGGCTAAAACACTCAACCAAGTTCTCATTCACAATGCCATCGCTAGCAGCGAAGA 1078 Query 17388 ACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTA 17447 | || | | ||||| |||||||| |||| || | ||| |||||| | | Sbjct 1079 AAGCAAGAACGTGCTTGATGAAATACCTTTCATCATCCGAAAGTTTAGCCCAGTCATCTT 1138 Query 17448 AATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACA 17507 ||||||||| | ||| ||||| |||| ||||| || || | |||||||| |||| Sbjct 1139 TATCTTTGGAAAGATCGACTTCCTCGGCTGTCCAGAAGGAGGCTTCAGCCTTTTTGTACA 1198 Query 17508 TATTCCAAATATCATTGTATTGTATGGGGAATACAACATATC 17549 | | ||||||||| || ||||| ||||| | | |||| ||| Sbjct 1199 TTTGCCAAATATCTTTATATTGGATGGGAAGAAGAACAAATC 1240 >seq139941 Length=1515 Score = 235 bits (260), Expect = 6e-57 Identities = 585/882 (66%), Gaps = 16/882 (2%) Strand=Plus/Minus Query 16676 TGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCC 16735 ||||| || | ||| | || || |||||||| || |||||||| | || || |||||| Sbjct 1148 TGGTATTCTCCAACTCTCTTCTCAAAAAAGTTTGTCTTGCCCTCCAAGGAAATGTTCTCC 1089 Query 16736 ATGAAATCAAAAGGATTAGTAGC--TGAAAATATTTTAGAGTACCCCAGTTCGGCGATTA 16793 ||||| ||||| || || |||| || ||| ||| ||| | || | | | | Sbjct 1088 ATGAAGTCAAATGGGTTTTTAGCATTGTAAACCTTT--GAGCAGTTGAGAGCAACCAGAA 1031 Query 16794 ATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGAC 16853 ||| || || |||||||| || || || ||| || | |||||| || ||||| Sbjct 1030 GTCTGTCAGCAACAAATTCAATGTACTGTTTCATCAAAGTGTGGTTCATGCCGATAAGCT 971 Query 16854 GTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATAC 16913 || ||||| ||||| || | ||| ||| || || ||||| || || | || || Sbjct 970 TAACTGGAAGGGCTTCTGTAAGGAATTCTTGTTCAATGACAACAGCATCTTGGATTATCG 911 Query 16914 TAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAA--ACATCAGACATGCGAA 16971 | || || || ||| | ||| | | || | |||||| ||| || || Sbjct 910 ATTTTATGACTTTTTCTGATGGTTT--GTTGACCAAGTACGAGAACATCATACAGGCAAA 853 Query 16972 ATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCAT 17031 || ||||| | |||||||| | ||||| || || || || || || | || ||||| Sbjct 852 GTCACAATGAAGACCCTCGTCACGACTGATGAGCTCATTTGAGAAGGTTAGACCTGGCAT 793 Query 17032 CTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTC 17091 ||| || | || |||| ||| || || || || || || ||||| ||||| || || || Sbjct 792 CTTGCCCCTCTTTTTTAGCCAGAAAATGGCAGCAAAAGAACCAGAGAAGAAGATTCCTTC 733 Query 17092 GACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTT----GTTACGAATCC 17147 || | ||||| || | || | || | || | || ||||| ||| |||| Sbjct 732 CACAGCAGCAAAGGCAACTATCCTCTCACCATAAGATGC-TCTTTCTGGGTTG---ATCC 677 Query 17148 ATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATA 17207 | ||| | |||||| ||||||| || | | ||| ||| || || ||||| || || | Sbjct 676 AATTCAGGGCCCACTGGGCTTTTCGCATGACACAAGGCATTGTCTCAATGGCATTGAAAA 617 Query 17208 ATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGG 17267 || || |||||| ||| || || || || || | || ||||||||||| | Sbjct 616 GTTGCTGTTTTTCAGCCGAGTCCTCAATGTAAGTTTCAATCAACAGACTGTACATTTCAG 557 Query 17268 AGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAA 17327 |||| || ||||| || ||||| || || || || || |||| || || | | ||| | Sbjct 556 AGTGGATATTCTCTATTGCTATTTGGAAGCCATAGAAACATCTCGCCTCTGGAACTTGGA 497 Query 17328 CTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAA 17387 ||||| | || | || | | || || ||||| ||||| ||||| || ||||| | Sbjct 496 CTTCCTGGCTAAAACACTCAACCAAGTTCTCATTCACAATGCCATCGCTAGCAGCGAAGA 437 Query 17388 ACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTA 17447 | || | | ||||| |||||||| |||| || | ||| |||||| | | Sbjct 436 AAGCAAGAACGTGCTTGATGAAATACCTTTCATCATCCGAAAGTTTAGCCCAGTCATCTT 377 Query 17448 AATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACA 17507 ||||||||| | ||| ||||| |||| ||||| || || | |||||||| |||| Sbjct 376 TATCTTTGGAAAGATCGACTTCCTCGGCTGTCCAGAAGGAGGCTTCAGCCTTTTTGTACA 317 Query 17508 TATTCCAAATATCATTGTATTGTATGGGGAATACAACATATC 17549 | | ||||||||| || ||||| ||||| | | |||| ||| Sbjct 316 TTTGCCAAATATCTTTATATTGGATGGGAAGAAGAACAAATC 275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515908680899040