Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq142104 304 1e-77 seq139941 304 1e-77 seq47423 114 1e-20 seq70487 82.4 8e-11 >seq142104 Length=1514 Score = 304 bits (336), Expect = 1e-77 Identities = 594/869 (68%), Gaps = 14/869 (2%) Strand=Plus/Plus Query 15914 TGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCC 15973 ||||| || | ||| | || || || ||||| || || ||||| || || || || ||| Sbjct 367 TGGTATTCTCCAACTCTCTTCTCAAAAAAGTTTGTCTTGCCCTCCAAGGAAATGTTCTCC 426 Query 15974 ATAAAATCAAAGGGATTAGTAGC--TGAAAATATCTTAGAGTACCCCAGTTCCGTAACTA 16031 || || ||||| || || |||| || ||| ||| ||| | || | | | Sbjct 427 ATGAAGTCAAATGGGTTTTTAGCATTGTAAAC--CTTTGAGCAGTTGAGAGCAACCAGAA 484 Query 16032 ATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTC 16091 ||| || || |||||||| || || || ||| || | || || || ||||| Sbjct 485 GTCTGTCAGCAACAAATTCAATGTACTGTTTCATCAAAGTGTGGTTCATGCCGATAAGCT 544 Query 16092 GTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATAT 16151 || ||||| |||| ||| | |||| |||||| || ||||| || |||| || ||| Sbjct 545 TAACTGGAAGGGCTTCTGTAAGGAATTCTTGTTCAATGACAACAGCATCTTGGAT--TAT 602 Query 16152 CGGTGGCTCG--TGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAA 16209 || | | | |||| || ||| | | | | || | ||||| | ||| || || Sbjct 603 CGATTTTATGACTTTTTCTGATGGTTTGTTGACCAAGTATGAGAACATCATACAGGCAAA 662 Query 16210 GTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCAT 16269 ||| ||||| || || ||||| | ||||| || || || || || |||| |||||||| Sbjct 663 GTCACAATGAAGACCCTCGTCACGACTGATGAGCTCATTTGAGAAGGTTAGACCTGGCAT 722 Query 16270 TTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTC 16329 || || | || |||| |||||| || |||||||| || || || ||||| || || || Sbjct 723 CTTGCCCCTCTTTTTTAGCCAGAAAATGGCAGCAAAAGAACCAGAGAAGAAGATTCCTTC 782 Query 16330 AACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGA-ATCCATT 16388 |||| ||||| || | || | || | || | || ||||| | ||||| | Sbjct 783 CACAGCAGCAAAGGCAACTATCCTCTCACCATAAGATGC-TCTTTCTGGGTTGATCCAAT 841 Query 16389 TCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATT 16448 || | |||| | |||||| | | | |||| ||| || || ||||| || || | || Sbjct 842 TCAGGGCCCACTGAGCTTTTCGCATGACACAAGGCATTGTCTCAATGGCATTGAAAAGTT 901 Query 16449 TCTCTTTTTC--CTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGA 16506 || |||||| | || | | || || || ||||||| | |||||||||||| || Sbjct 902 GCTGTTTTTCAGCCGAGTCCTCA--ATGTAAGTTTCAATCAACAGACTGTACATTTCAGA 959 Query 16507 GTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTAC 16566 ||| || |||||||| ||||| || || |||||||| |||| ||||| | | ||| || Sbjct 960 GTGGATATTCTCTATTGCTATTTGGAAGCCATAGAAACATCTCGCCTCTGGAACTTGGAC 1019 Query 16567 TTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAA 16626 |||| | ||| | || ||| |||||||||||| || || || || ||||| || || Sbjct 1020 TTCCTGGCTAAAACACTCAACCAAGTTCTCATTCACAATGCCATCGCTAGCAGCGAAGAA 1079 Query 16627 CGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAA 16686 || | | |||||| |||||||| |||| ||| | ||| || ||| || | | Sbjct 1080 AGCAAGAACGTGCTTGATGAAATACCTTTCATCATCCGAAAGTTTAGCCCAGTCATCTTT 1139 Query 16687 ATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACAT 16746 ||||||||| | ||| ||||| || | ||||| ||| || | |||||||| ||||| Sbjct 1140 ATCTTTGGAAAGATCGACTTCCTCGGCTGTCCAGAAGGAGGCTTCAGCCTTTTTGTACAT 1199 Query 16747 TTTCCAAATATCATTGTATTGTATGGGAA 16775 || ||||||||| || ||||| ||||||| Sbjct 1200 TTGCCAAATATCTTTATATTGGATGGGAA 1228 >seq139941 Length=1515 Score = 304 bits (336), Expect = 1e-77 Identities = 594/869 (68%), Gaps = 14/869 (2%) Strand=Plus/Minus Query 15914 TGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCC 15973 ||||| || | ||| | || || || ||||| || || ||||| || || || || ||| Sbjct 1148 TGGTATTCTCCAACTCTCTTCTCAAAAAAGTTTGTCTTGCCCTCCAAGGAAATGTTCTCC 1089 Query 15974 ATAAAATCAAAGGGATTAGTAGC--TGAAAATATCTTAGAGTACCCCAGTTCCGTAACTA 16031 || || ||||| || || |||| || ||| ||| ||| | || | | | Sbjct 1088 ATGAAGTCAAATGGGTTTTTAGCATTGTAAAC--CTTTGAGCAGTTGAGAGCAACCAGAA 1031 Query 16032 ATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTC 16091 ||| || || |||||||| || || || ||| || | || || || ||||| Sbjct 1030 GTCTGTCAGCAACAAATTCAATGTACTGTTTCATCAAAGTGTGGTTCATGCCGATAAGCT 971 Query 16092 GTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATAT 16151 || ||||| |||| ||| | |||| |||||| || ||||| || |||| || ||| Sbjct 970 TAACTGGAAGGGCTTCTGTAAGGAATTCTTGTTCAATGACAACAGCATCTTGGAT--TAT 913 Query 16152 CGGTGGCTCG--TGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAA 16209 || | | | |||| || ||| | | | | || ||||| | ||| || || Sbjct 912 CGATTTTATGACTTTTTCTGATGGTTTGTTGACCAAGTACGAGAACATCATACAGGCAAA 853 Query 16210 GTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCAT 16269 ||| ||||| || || ||||| | ||||| || || || || || |||| |||||||| Sbjct 852 GTCACAATGAAGACCCTCGTCACGACTGATGAGCTCATTTGAGAAGGTTAGACCTGGCAT 793 Query 16270 TTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTC 16329 || || | || |||| |||||| || |||||||| || || || ||||| || || || Sbjct 792 CTTGCCCCTCTTTTTTAGCCAGAAAATGGCAGCAAAAGAACCAGAGAAGAAGATTCCTTC 733 Query 16330 AACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGA-ATCCATT 16388 |||| ||||| || | || | || | || | || ||||| | ||||| | Sbjct 732 CACAGCAGCAAAGGCAACTATCCTCTCACCATAAGATGC-TCTTTCTGGGTTGATCCAAT 674 Query 16389 TCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATT 16448 || | |||| | ||||||| | | | |||| ||| || || ||||| || || | || Sbjct 673 TCAGGGCCCACTGGGCTTTTCGCATGACACAAGGCATTGTCTCAATGGCATTGAAAAGTT 614 Query 16449 TCTCTTTTTC--CTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGA 16506 || |||||| | || | | || || || ||||||| | |||||||||||| || Sbjct 613 GCTGTTTTTCAGCCGAGTCCTCA--ATGTAAGTTTCAATCAACAGACTGTACATTTCAGA 556 Query 16507 GTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTAC 16566 ||| || |||||||| ||||| || || |||||||| |||| ||||| | | ||| || Sbjct 555 GTGGATATTCTCTATTGCTATTTGGAAGCCATAGAAACATCTCGCCTCTGGAACTTGGAC 496 Query 16567 TTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAA 16626 |||| | ||| | || ||| |||||||||||| || || || || ||||| || || Sbjct 495 TTCCTGGCTAAAACACTCAACCAAGTTCTCATTCACAATGCCATCGCTAGCAGCGAAGAA 436 Query 16627 CGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAA 16686 || | | |||||| |||||||| |||| ||| | ||| || ||| || | | Sbjct 435 AGCAAGAACGTGCTTGATGAAATACCTTTCATCATCCGAAAGTTTAGCCCAGTCATCTTT 376 Query 16687 ATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACAT 16746 ||||||||| | ||| ||||| || | ||||| ||| || | |||||||| ||||| Sbjct 375 ATCTTTGGAAAGATCGACTTCCTCGGCTGTCCAGAAGGAGGCTTCAGCCTTTTTGTACAT 316 Query 16747 TTTCCAAATATCATTGTATTGTATGGGAA 16775 || ||||||||| || ||||| ||||||| Sbjct 315 TTGCCAAATATCTTTATATTGGATGGGAA 287 >seq47423 Length=281 Score = 114 bits (126), Expect = 1e-20 Identities = 123/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 16194 ACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAA 16253 |||| || || || ||||| || || || || ||||| |||||||| | || ||||| | Sbjct 48 ACATGAGGCAAGCAAAGTCACAGTGAAGCCCCTCGTCCCTGCTGATCAACTCATTGGAGA 107 Query 16254 AAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCG 16313 | || | ||||||||| |||| |||||| | |||||| || | |||||||| |||| Sbjct 108 AGGTGAGCCCTGGCATGAGACCTCTTTTCTTGAGCCAGAAAATAGATGCAAATGAACCCG 167 Query 16314 AAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTC 16356 ||||||| || |||||||| | ||||| || || | || ||| Sbjct 168 AAAAGAAGATGCCCTCAACTGCGGCAAAGGCAATAACTCTTTC 210 >seq70487 Length=321 Score = 82.4 bits (90), Expect = 8e-11 Identities = 117/163 (72%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 16481 TCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAG 16540 |||||||| | | ||| | || ||||| ||||| || ||||| || ||||| |||||| Sbjct 140 TCAATCAGCAGAGAGTAGGTCTCGGAGTGGATGTTTTCCATGGCCATTTGAAAGCCATAG 199 Query 16541 AAGCATCGAGCCTCCGCTATTTGTACTTCCACGT--AAAATCGTTCCGCCAGGTTCTCAT 16598 ||| ||| ||||||| | || | || | ||| ||||| |||| ||| || Sbjct 200 AAGGCTCGGGCCTCCGGAACCTGGATCTCAGTGCTGAAATTCGTT--GCCAAGTTTTCCA 257 Query 16599 TCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTT 16641 || || ||||||||||| ||||| || || || |||||||| Sbjct 258 AGACAATGCCGTCACTTGCCGCAAAGAAGGCTAAGATGTGCTT 300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 509796872964960