Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudodiploria_20strigosa_20[genbank_20GCA_5F000751095.1_202014-09- 07] 253,028 sequences; 167,153,529 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq96271 125 5e-24 seq96269 125 5e-24 seq6934 91.5 1e-13 >seq96271 Length=453 Score = 125 bits (138), Expect = 5e-24 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 101671 CTGCATTTTAAGAGCATCAATGTGATCTACATAGATGTGAGCATCTCCTATAGTATGGAT 101730 ||| | ||| | ||| |||||||||| || ||| | || |||||||| | ||||||| Sbjct 208 CTGGAGTTTCAAAGCTTCAATGTGATTTAAATAAACATGTGCATCTCCCAGTGTATGGAC 149 Query 101731 AAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCT 101790 ||| || |||||| || | |||||| || |||| | | || | ||| ||||| || Sbjct 148 AAAGTCACCAGGCTTTAACCCACAGACATGTGCTATCAGGAATGTCAGAAGGGAATAACT 89 Query 101791 AGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGA 101850 ||||||||||| || || || | ||||| || | ||||||||||| || ||||| || Sbjct 88 GGCAATGTTAAAGGGTACACCCAGGCCCATGTCCCCGGATCTTTGATAGAGCTGACAAGA 29 Query 101851 AAGCTTTCCATCACAGACATAAAATTG 101877 |||| ||||| ||| |||||||| Sbjct 28 GAGCTCTCCATTGTTGACGTAAAATTG 2 >seq96269 Length=446 Score = 125 bits (138), Expect = 5e-24 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 101671 CTGCATTTTAAGAGCATCAATGTGATCTACATAGATGTGAGCATCTCCTATAGTATGGAT 101730 ||| | ||| | ||| |||||||||| || ||| | || |||||||| | ||||||| Sbjct 239 CTGGAGTTTCAAAGCTTCAATGTGATTTAAATAAACATGTGCATCTCCCAGTGTATGGAC 298 Query 101731 AAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCT 101790 ||| || |||||| || | |||||| || |||| | | || | ||| ||||| || Sbjct 299 AAAGTCACCAGGCTTTAACCCACAGACATGTGCTATCAGGAATGTCAGAAGGGAATAACT 358 Query 101791 AGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGA 101850 ||||||||||| || || || | ||||| || | ||||||||||| || ||||| || Sbjct 359 GGCAATGTTAAAGGGTACACCCAGGCCCATGTCCCCGGATCTTTGATAGAGCTGACAAGA 418 Query 101851 AAGCTTTCCATCACAGACATAAAATTG 101877 |||| ||||| ||| |||||||| Sbjct 419 GAGCTCTCCATTGTTGACGTAAAATTG 445 >seq6934 Length=470 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/234 (69%), Gaps = 12/234 (5%) Strand=Plus/Plus Query 102037 ATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATC 102096 ||||| ||||| ||||| | ||||||||||||||| || || ||||||||||| || || Sbjct 91 ATATTTAGCTCCAAAATGACGCCACTGAAATCCATAAACTGGGCCAAGATCTCCCTCCTC 150 Query 102097 TCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTG 102156 ||||| || ||||| | || | | ||| || || ||||| |||||||| | || Sbjct 151 TCTGTGATGCAAACCTTGCTTGTTAAGAAAATCTCGTGAACCATTAGCATCCCAGAAATG 210 Query 102157 CACGCCAGCTGCTGATAGCTC------TTTGCTGTCAGTAGATCCTCTGATAAACCACAA 102210 | || || || ||| ||||| | |||| | || || | |||||||| Sbjct 211 AATTCC-----CTTATCACTCAACTGTTTTGC-ATTAGTACAACCACTCACAAACCACAG 264 Query 102211 CAGTTCTTCAACAACACCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAAA 102264 ||| || || | || || | |||||| || | ||| || || | || ||||| Sbjct 265 CAGCTCCTCGGCCACTCCGCGCCAAAACACACGCTTTGTTGTGAGGAGAGGAAA 318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360137181226028